Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g1845 | ATGTCTCGAAGATCGACTAGGTTAGTGGAAAAAACTAAGGAGTGTTTAGAAAAAACCACAAACAGTGATACTGCAATATCATCCCGAGCTAAGAGATATGGTGCATCTGGGGGAACTGATAAATCTTCTAGAGTGAGTCAAAAGTTGAAGCAGAATAATGAGATTAAGGTGAACGAAGTTCTGTTTCCTCCTCTATCACCTGATCAATCAGAGAGGAAAAAGAGAAAGATTTACCGTAAGAGTTCAGTAGTCACAAGAGGAACTGCTTCAAAGCATTTTGAGTCCGAGGGGCTCAAAAAAGGTGGCGGGAGATCAAGGAAGAGGGTGTATTATCAAAAAGTTGTTTTTGATGGTGGTGAATTTGAGGCAGGAGACAATGTTTATGTAAAGAGGAGAGAGGATACAAGCTCTGACGACGAAGACCCTGAAGTTGAGGAGTGCAGAGTGTGCTTTAAGTCTGGAAAGGCAATAATGATTGAGTGTGATGATTGCCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCGCCAATGAAGGAAGTCCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAGGAAGTTCAGTTGCCAAAGCCTCCGGAGGGTAAAAAACGGGCTAGGACAATGAGAGAGAAGCTTTTGGCAGGTGACTTATGGGCTGCTCACATTGTAAGTTTATGGAAAGAAGTAAATGGTAATTATCAATGTAAGGTTAGATGGTATATGATCCCAGAGGAGACCGCAGCAGGGAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTGACTAATGATTATGCAGATATTGAGATGGAATCTCTTCTTCGATTATGTCAAGTCATGAATCCTAAAGACTATAATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAATATGATGTCCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAAAGAAGAGGATGGTGAAGCAGTTGATAGTGACAAAGACTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGATGGAGATGTGGAATATGAAGAAGAGAGAGCGCAACCTTTATTTCGAAACTGCTCAAGCTCAACCCATGAATTGACTGCCAATTCAAGAAAAGGACGATTTTGTGGACTACAAAAGATGGGAGCAAAGAAGATCCCAGAGCATATAAGATGCCACAAACAGACTGAGTTGGAAAGAGCAAAGGCAACCCTCATGTTGTCGTCATTACCCAAGTCTTTACCCTGTAGGAATAAAGAAATCGAGGAGATAACTACATTTATAGAAAGTGCCATATGTGATGATCAATGTTTAGGGCGCTGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCGGTAATGAGGATTTTGCGGGCAAAAGTTGATGCAGGAAATATAAGGCCTCATTGCTTTGTAGAGGTTAACGGTCTAAAACTGGCATCACCAGAAAATATATACAGGGTTATATATGAAGCATTAACCGGGCATAGAGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAAAGAAGATGAACGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAGGCAAAGTTGATTGTGATAGGAATTGCAAACACCATGGATCTCCCTGAAAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCTTATAACTATCAGCAACTTCAACAAATCATTTCTAGCCGCCTTGAAGGAATTGATGCATTTGAAAAACAAGCCATTGAATTTGCATCGAGAAAGGTGGCTGCTATTTCCGGAGATGCACGCCGTGCTCTAGAGATATGTAGGCGTGCAGCTGAAATTACAGATTATCATATAAAGAAGCTAAGTTTGACTTCCGACACTGATATGAATGCAAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCATAGTAAGATCTTCTTGACAGCTATTGTGCATGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCTATGACCGTCTCGTACCTTTGTACAAGCAATGGAGAAGAATTTCCAGGATATGATGCCCTCTTGAAAGTTGGTTGTAGGCTTGGTGAATGTAGAATTATTTTGTGTGAATCGGGAGCTAAACATCGGTTGCAGAAGTTACAACTTAATTTTCCAAGTGATGACGTGTCATTTGCACTGAAAGACAGCAAGGATCTACCTTGGTTGGCCAAGTATTTATGA | 2394 | 40.64 | MSRRSTRLVEKTKECLEKTTNSDTAISSRAKRYGASGGTDKSSRVSQKLKQNNEIKVNEVLFPPLSPDQSERKKRKIYRKSSVVTRGTASKHFESEGLKKGGGRSRKRVYYQKVVFDGGEFEAGDNVYVKRREDTSSDDEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLKPPMKEVPEGDWICGFCEATKMGKEVQLPKPPEGKKRARTMREKLLAGDLWAAHIVSLWKEVNGNYQCKVRWYMIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCQVMNPKDYNNAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEEDGEAVDSDKDWKLDQNADSDSDGDVEYEEERAQPLFRNCSSSTHELTANSRKGRFCGLQKMGAKKIPEHIRCHKQTELERAKATLMLSSLPKSLPCRNKEIEEITTFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRILRAKVDAGNIRPHCFVEVNGLKLASPENIYRVIYEALTGHRVNWKKALQLLTKRFSDVNNCKEDERPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQQIISSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHIKKLSLTSDTDMNAKTHVGIAEVEAAIQEMFQAPHIQVMKSCSKHSKIFLTAIVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNFPSDDVSFALKDSKDLPWLAKYL | 797 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 42847557 | 42855204 | - | Sed0019583.1 | Sed06g1845 | 718388 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g1845 | 797 | FunFam | Origin recognition complex subunit 1 | 399 | 597 | - | - | |
Sed06g1845 | 797 | ProSiteProfiles | Zinc finger PHD-type profile. | 144 | 193 | IPR019787 | - | |
Sed06g1845 | 797 | SMART | AAA_5 | 442 | 595 | IPR003593 | GO:0016887(InterPro) | |
Sed06g1845 | 797 | ProSitePatterns | Zinc finger PHD-type signature. | 147 | 190 | IPR019786 | - | |
Sed06g1845 | 797 | FunFam | Origin recognition complex subunit 1 | 142 | 209 | - | - | |
Sed06g1845 | 797 | Pfam | BAH domain | 227 | 316 | IPR001025 | GO:0003682(InterPro) | |
Sed06g1845 | 797 | FunFam | Origin recognition complex subunit 1 | 594 | 686 | - | - | |
Sed06g1845 | 797 | SMART | BAH_4 | 178 | 318 | IPR001025 | GO:0003682(InterPro) | |
Sed06g1845 | 797 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 196 | 793 | IPR050311 | GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER) | |
Sed06g1845 | 797 | SMART | PHD_3 | 146 | 191 | IPR001965 | - | |
Sed06g1845 | 797 | Pfam | CDC6, C terminal winged helix domain | 692 | 783 | IPR015163 | - | |
Sed06g1845 | 797 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 212 | IPR013083 | - | |
Sed06g1845 | 797 | MobiDBLite | consensus disorder prediction | 323 | 350 | - | - | |
Sed06g1845 | 797 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 412 | 654 | IPR027417 | - | |
Sed06g1845 | 797 | MobiDBLite | consensus disorder prediction | 323 | 343 | - | - | |
Sed06g1845 | 797 | Pfam | ATPase family associated with various cellular activities (AAA) | 447 | 591 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Sed06g1845 | 797 | Gene3D | - | 398 | 592 | IPR027417 | - | |
Sed06g1845 | 797 | SUPERFAMILY | FYVE/PHD zinc finger | 133 | 196 | IPR011011 | - | |
Sed06g1845 | 797 | Gene3D | - | 593 | 683 | - | - | |
Sed06g1845 | 797 | Pfam | AAA lid domain | 619 | 654 | IPR041083 | - | |
Sed06g1845 | 797 | Pfam | PHD-finger | 147 | 190 | IPR019787 | - | |
Sed06g1845 | 797 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Sed06g1845 | 797 | FunFam | Origin recognition complex subunit 1 | 210 | 401 | - | - | |
Sed06g1845 | 797 | Gene3D | - | 88 | 333 | IPR043151 | - | |
Sed06g1845 | 797 | ProSiteProfiles | BAH domain profile. | 191 | 318 | IPR001025 | GO:0003682(InterPro) | |
Sed06g1845 | 797 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3753 | Sed-Chr5:45376890 | Sed06g1845 | Sed-Chr6:42847557 | 1.20E-31 | dispersed | |
Sed05g3754 | Sed-Chr5:45376890 | Sed06g1845 | Sed-Chr6:42847557 | 1.20E-31 | dispersed | |
Sed06g1845 | Sed-Chr6:42847557 | Sed07g2803 | Sed-Chr7:42891462 | 1.30E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38912 | PF00004 | AAA | 2.70E-19 | CL0023 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g1845 | K02603 | - | csv:101214082 | 1372.45 |