Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1845 ATGTCTCGAAGATCGACTAGGTTAGTGGAAAAAACTAAGGAGTGTTTAGAAAAAACCACAAACAGTGATACTGCAATATCATCCCGAGCTAAGAGATATGGTGCATCTGGGGGAACTGATAAATCTTCTAGAGTGAGTCAAAAGTTGAAGCAGAATAATGAGATTAAGGTGAACGAAGTTCTGTTTCCTCCTCTATCACCTGATCAATCAGAGAGGAAAAAGAGAAAGATTTACCGTAAGAGTTCAGTAGTCACAAGAGGAACTGCTTCAAAGCATTTTGAGTCCGAGGGGCTCAAAAAAGGTGGCGGGAGATCAAGGAAGAGGGTGTATTATCAAAAAGTTGTTTTTGATGGTGGTGAATTTGAGGCAGGAGACAATGTTTATGTAAAGAGGAGAGAGGATACAAGCTCTGACGACGAAGACCCTGAAGTTGAGGAGTGCAGAGTGTGCTTTAAGTCTGGAAAGGCAATAATGATTGAGTGTGATGATTGCCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCGCCAATGAAGGAAGTCCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAGGAAGTTCAGTTGCCAAAGCCTCCGGAGGGTAAAAAACGGGCTAGGACAATGAGAGAGAAGCTTTTGGCAGGTGACTTATGGGCTGCTCACATTGTAAGTTTATGGAAAGAAGTAAATGGTAATTATCAATGTAAGGTTAGATGGTATATGATCCCAGAGGAGACCGCAGCAGGGAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTGACTAATGATTATGCAGATATTGAGATGGAATCTCTTCTTCGATTATGTCAAGTCATGAATCCTAAAGACTATAATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAATATGATGTCCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAAAGAAGAGGATGGTGAAGCAGTTGATAGTGACAAAGACTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGATGGAGATGTGGAATATGAAGAAGAGAGAGCGCAACCTTTATTTCGAAACTGCTCAAGCTCAACCCATGAATTGACTGCCAATTCAAGAAAAGGACGATTTTGTGGACTACAAAAGATGGGAGCAAAGAAGATCCCAGAGCATATAAGATGCCACAAACAGACTGAGTTGGAAAGAGCAAAGGCAACCCTCATGTTGTCGTCATTACCCAAGTCTTTACCCTGTAGGAATAAAGAAATCGAGGAGATAACTACATTTATAGAAAGTGCCATATGTGATGATCAATGTTTAGGGCGCTGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCGGTAATGAGGATTTTGCGGGCAAAAGTTGATGCAGGAAATATAAGGCCTCATTGCTTTGTAGAGGTTAACGGTCTAAAACTGGCATCACCAGAAAATATATACAGGGTTATATATGAAGCATTAACCGGGCATAGAGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAAAGAAGATGAACGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAGGCAAAGTTGATTGTGATAGGAATTGCAAACACCATGGATCTCCCTGAAAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCTTATAACTATCAGCAACTTCAACAAATCATTTCTAGCCGCCTTGAAGGAATTGATGCATTTGAAAAACAAGCCATTGAATTTGCATCGAGAAAGGTGGCTGCTATTTCCGGAGATGCACGCCGTGCTCTAGAGATATGTAGGCGTGCAGCTGAAATTACAGATTATCATATAAAGAAGCTAAGTTTGACTTCCGACACTGATATGAATGCAAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCATAGTAAGATCTTCTTGACAGCTATTGTGCATGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCTATGACCGTCTCGTACCTTTGTACAAGCAATGGAGAAGAATTTCCAGGATATGATGCCCTCTTGAAAGTTGGTTGTAGGCTTGGTGAATGTAGAATTATTTTGTGTGAATCGGGAGCTAAACATCGGTTGCAGAAGTTACAACTTAATTTTCCAAGTGATGACGTGTCATTTGCACTGAAAGACAGCAAGGATCTACCTTGGTTGGCCAAGTATTTATGA 2394 40.64 MSRRSTRLVEKTKECLEKTTNSDTAISSRAKRYGASGGTDKSSRVSQKLKQNNEIKVNEVLFPPLSPDQSERKKRKIYRKSSVVTRGTASKHFESEGLKKGGGRSRKRVYYQKVVFDGGEFEAGDNVYVKRREDTSSDDEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLKPPMKEVPEGDWICGFCEATKMGKEVQLPKPPEGKKRARTMREKLLAGDLWAAHIVSLWKEVNGNYQCKVRWYMIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCQVMNPKDYNNAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEEDGEAVDSDKDWKLDQNADSDSDGDVEYEEERAQPLFRNCSSSTHELTANSRKGRFCGLQKMGAKKIPEHIRCHKQTELERAKATLMLSSLPKSLPCRNKEIEEITTFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRILRAKVDAGNIRPHCFVEVNGLKLASPENIYRVIYEALTGHRVNWKKALQLLTKRFSDVNNCKEDERPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQQIISSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHIKKLSLTSDTDMNAKTHVGIAEVEAAIQEMFQAPHIQVMKSCSKHSKIFLTAIVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNFPSDDVSFALKDSKDLPWLAKYL 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42847557 42855204 - Sed0019583.1 Sed06g1845 718388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1845 797 FunFam Origin recognition complex subunit 1 399 597 - -
Sed06g1845 797 ProSiteProfiles Zinc finger PHD-type profile. 144 193 IPR019787 -
Sed06g1845 797 SMART AAA_5 442 595 IPR003593 GO:0016887(InterPro)
Sed06g1845 797 ProSitePatterns Zinc finger PHD-type signature. 147 190 IPR019786 -
Sed06g1845 797 FunFam Origin recognition complex subunit 1 142 209 - -
Sed06g1845 797 Pfam BAH domain 227 316 IPR001025 GO:0003682(InterPro)
Sed06g1845 797 FunFam Origin recognition complex subunit 1 594 686 - -
Sed06g1845 797 SMART BAH_4 178 318 IPR001025 GO:0003682(InterPro)
Sed06g1845 797 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 196 793 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Sed06g1845 797 SMART PHD_3 146 191 IPR001965 -
Sed06g1845 797 Pfam CDC6, C terminal winged helix domain 692 783 IPR015163 -
Sed06g1845 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 212 IPR013083 -
Sed06g1845 797 MobiDBLite consensus disorder prediction 323 350 - -
Sed06g1845 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 654 IPR027417 -
Sed06g1845 797 MobiDBLite consensus disorder prediction 323 343 - -
Sed06g1845 797 Pfam ATPase family associated with various cellular activities (AAA) 447 591 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed06g1845 797 Gene3D - 398 592 IPR027417 -
Sed06g1845 797 SUPERFAMILY FYVE/PHD zinc finger 133 196 IPR011011 -
Sed06g1845 797 Gene3D - 593 683 - -
Sed06g1845 797 Pfam AAA lid domain 619 654 IPR041083 -
Sed06g1845 797 Pfam PHD-finger 147 190 IPR019787 -
Sed06g1845 797 MobiDBLite consensus disorder prediction 1 47 - -
Sed06g1845 797 FunFam Origin recognition complex subunit 1 210 401 - -
Sed06g1845 797 Gene3D - 88 333 IPR043151 -
Sed06g1845 797 ProSiteProfiles BAH domain profile. 191 318 IPR001025 GO:0003682(InterPro)
Sed06g1845 797 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3753 Sed-Chr5:45376890 Sed06g1845 Sed-Chr6:42847557 1.20E-31 dispersed
Sed05g3754 Sed-Chr5:45376890 Sed06g1845 Sed-Chr6:42847557 1.20E-31 dispersed
Sed06g1845 Sed-Chr6:42847557 Sed07g2803 Sed-Chr7:42891462 1.30E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38912 PF00004 AAA 2.70E-19 CL0023 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1845 K02603 - csv:101214082 1372.45