Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1847 ATGGCAGCGGCAAAGACTATCTTCTTTTCCTCTCCAGTGGCGATTCTTCATCAGTCCGTCAAATCTTCGCAAACTCAGCCGCGTCCATCAATTCCGACATTCAAACCTGTTATCTCTTTGAAAGCAAACCCTAGCAATGGCGTCTTCATCAGTTGTAGGCAATTTCACATCGCACCGGTTACTCGAGCACGGAGAAACAAGTTGATTACGGTTTCTGGATTGGCGGATTGCAATCCCGGCGGTGAAAATGGATCTTCAGATACAGATTCGGATACGGGGGCTGCTGCTATTGATATAAAGCTTCCAAGAAGAAGTTTGAGTGTAACTTTTACTTGTAACCAATGTGGTGAGAGGACGAAGAGGCTCGTTAATCGATTAGCTTACGAACGGGGGCTTGTTTTTGTTCAGTGTGCAGGATGTTTAAAGTATCACAAACTGGTGGATAATCTTGGTCTGATCGTAGAATACGACTTCCGGGAGGAGGATGCGGACTCAAATTCAGGACAAGTTTGA 513 45.42 MAAAKTIFFSSPVAILHQSVKSSQTQPRPSIPTFKPVISLKANPSNGVFISCRQFHIAPVTRARRNKLITVSGLADCNPGGENGSSDTDSDTGAAAIDIKLPRRSLSVTFTCNQCGERTKRLVNRLAYERGLVFVQCAGCLKYHKLVDNLGLIVEYDFREEDADSNSGQV 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42863960 42867353 - Sed0005065.1 Sed06g1847 718390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1847 170 ProSiteProfiles Zinc finger DNL-type profile. 101 170 IPR007853 GO:0008270(InterPro)
Sed06g1847 170 PANTHER UNCHARACTERIZED 27 166 IPR024158 GO:0005739(PANTHER)|GO:0006457(PANTHER)|GO:0030150(PANTHER)|GO:0050821(PANTHER)|GO:0051087(PANTHER)
Sed06g1847 170 Pfam DNL zinc finger 108 155 IPR007853 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1847 K17808 - - csv:101206910 228.409
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g222 . . . . . . . . Cmo04g01622 . . . Car04g01601 . Sed06g1847 . . Bhi07g01387 Tan04g0921 Cmetu10g1685 . Hepe10g1854 . . Cla05g02347 . . Cco05g2587 . . . . . . . . Csa05g02562 Chy10g01102 Cme10g00308 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014185 0 1 0 0 0 0 1 1 0 1 2 0 1 1 1 1 0 0 1 0 1 1 1 0 1 1 1 1 2 1 21