Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1850 ATGCCGTCGCCTCAGATCCTACCTATTACCCAGCCCCCTTCATCTTCAGCTGCAACGACCACATCTACGGCTGTAGACCTAACGCTGCTCCAAGAGGACGGTACTCAGATTGTTTCTCCGTTCTCCGACGATGATCGTAGGTCGATCGCGCTGACGCCTCTTCTTCCCAGGACTTCAAGCTTTGTCTCCACCACGTCTAGTTCTAGCAGTTTGTACAAGCAGAAGCGGAGGCGAGTCAGGAGTGAAGAGTTCTTGAACTTTTTCTCCGGTGATCGCCGCCGTCACCAGGCTGTTGATCGTGATCTCGAGAATGCTGATGTCCAGAGAGCTGAGAGATTTTTACTTACTCGCTTTGGTTTTAAACTCTCCAAATATGTTAGGGTAGCATTCAGATGGATTGCAAGGTTTCTCGCACTTGGCTGTTATTCATTGTTTCTTCTCCCAGGCTTTCTTCAAGTTGGATACTATTATTTCTCATCCAGTCAGATACGCAGAAGTATACCCTATGGTGATAAACCAAGGAATAAGTTGGATCTTTATCTACCAAGACATATGGATGGGCCAAAACCAGTTGTTGCATTTATCACTGGCGGGGCTTGGATTATTGGCTACAAAGCTTGGGGTTGTCTTCTTGGACAACAATTATCAGAAAGAGATGTCATCGTAGCATGCATAGATTACAGAAATTTTCCTCAGGGAACTATGAGTGATATGATTGATGATGCTTCCCAAGGTATCTCGTTCTTGTGTAATAACATCAAAGAATACGGAGGCGATCCAAGCAGAATTTATCTAATGGGGCAGTCAGCCGGTGCACATATAGCTGCTTGCGCACTTTTGGATCAAGCGATGAAAGAGGTTCGCAAAGTAGAAAGTATCTCATGGAGTGTGTCACAGATTAAAGCTTACTTTGGATTGTCAGGAGGGTATAATTTGCTTAATCTGGTCGACTACTTTCACTCTCGTGGTCTATATCGCTCTCTTTTTCTAAGCATAATGGAAGGAGAACAATCCTTGAAACGATTTTCACCCGAAGTATTGATCATGGAAGAACCCAACATTGGAACTGCAGTTTCGATTCTTCCTCCTGTCATTTTATTTCATGGAACCGCCGACTATTCTATTCCATCAAATTCTAGTAAAACTTTTGCTGAAACTCTTCAAAGTGTTGGAGTGAAAACTGAGACATTTTTCTACGAAGGAAAGACGCATACAGATGTATTTGTTCAGGATCCATTGAGGGGTGGCAAAGATCAGATGTTTGAAGATCTTGTCGCAATCATCCATGCCGATGATGCAGAAGCGCAGGCGAAAGATGCAGTGGCACCTCCAAGAAGACGCCTTGTACCCGAATTTATGTTGATGTTGGCTCGTAGTGTTAGCCCTTTCTAA 1392 44.04 MPSPQILPITQPPSSSAATTTSTAVDLTLLQEDGTQIVSPFSDDDRRSIALTPLLPRTSSFVSTTSSSSSLYKQKRRRVRSEEFLNFFSGDRRRHQAVDRDLENADVQRAERFLLTRFGFKLSKYVRVAFRWIARFLALGCYSLFLLPGFLQVGYYYFSSSQIRRSIPYGDKPRNKLDLYLPRHMDGPKPVVAFITGGAWIIGYKAWGCLLGQQLSERDVIVACIDYRNFPQGTMSDMIDDASQGISFLCNNIKEYGGDPSRIYLMGQSAGAHIAACALLDQAMKEVRKVESISWSVSQIKAYFGLSGGYNLLNLVDYFHSRGLYRSLFLSIMEGEQSLKRFSPEVLIMEEPNIGTAVSILPPVILFHGTADYSIPSNSSKTFAETLQSVGVKTETFFYEGKTHTDVFVQDPLRGGKDQMFEDLVAIIHADDAEAQAKDAVAPPRRRLVPEFMLMLARSVSPF 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42899732 42905225 + Sed0007827.1 Sed06g1850 718393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1850 463 Gene3D alpha/beta hydrolase 157 412 IPR029058 -
Sed06g1850 463 Pfam BD-FAE 177 387 IPR049492 -
Sed06g1850 463 PANTHER AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C 64 429 IPR050300 GO:0016298(PANTHER)
Sed06g1850 463 MobiDBLite consensus disorder prediction 1 20 - -
Sed06g1850 463 SUPERFAMILY alpha/beta-Hydrolases 165 426 IPR029058 -
Sed06g1850 463 FunFam Isoprenylcysteine alpha-carbonyl methylesterase ICME 158 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2678 Sed-Chr5:38194872 Sed06g1850 Sed-Chr6:42899732 1.70E-138 dispersed
Sed05g2679 Sed-Chr5:38194872 Sed06g1850 Sed-Chr6:42899732 4.00E-118 dispersed
Sed06g1850 Sed-Chr6:42899732 Sed06g1851 Sed-Chr6:42899732 1.40E-202 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1850 K15889 - csv:101206426 772.696