Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1865 ATGGACGGAATTTGCATCGACGAAAGCAGTACGTCATCGGAATCTTCGCCGGCGGTAAAGTCTTCTCCGCCGGAGACCAGCGTTGTTGTGGACTCCGCAGAGTCGAGTAGCGGCAGCGGTAACGTAGAGGGGGAGTCACGAAAACTACCTTCGTCACGTTACAAAGGAGTGGTCCCACAGCCAAACGGCCGTTGGGGGGCCCAGATTTACGAGAAGCACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGCCGAAGCCGCGCGTGCCTACGACGTGGCGGCCCAACGCTTCCGCGGCCGCGACGCCGTTACCAACTTCAAGTCGGCCGAACAAAACCACGCCGTGTCCGCCTTCCTCAACTCCCATTCCAAGGCCGAGATCGTCGACATGCTTCGTAAACACACCTACCTCGACGAGCTCAACCAAAGCAAACGAGTCCCCGGTTTTCTTGGACCGGACCGGAAGCGACCCACTTTCGCTTCCGGTTCAGAAGCGAATCTCGAACTTCTATTCGAGAAAGCCGTGACCCCGAGCGACGTGGGGAAGCTGAACCGTTTGGTTATTCCTAAACAGCACGCGGAGAAGAACTTTCCACTCGAAACCGGTTCGACCGCTTCCTCGAAAGGGCTCCTCTTGAACTTCGAAGACCGCGGCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTGACGAAAGGGTGGAGCCGGTTCGTGAAGGAAAAGAATTTGAAAGCCGGTGATGTTGTGAGTTTCTTGAGATCGACGGGTCAAGAAAAACAGCTTTACATCGAATGGAAGCCTAGAATGGCATCTCTGAACCCGGTTCAGACGGTGAGGTTATTTGGAGTGGATATTATGAAAGTATTGCCAAATAGTGGGTGCAGTGAGAAAAGGAGAAGAGAAATGGAGTTTCTTACTTTAGAATGTACCAAAAAACAAAGGATTGTTGGAGCATTGTAG 984 52.85 MDGICIDESSTSSESSPAVKSSPPETSVVVDSAESSSGSGNVEGESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEAEAARAYDVAAQRFRGRDAVTNFKSAEQNHAVSAFLNSHSKAEIVDMLRKHTYLDELNQSKRVPGFLGPDRKRPTFASGSEANLELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLETGSTASSKGLLLNFEDRGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVSFLRSTGQEKQLYIEWKPRMASLNPVQTVRLFGVDIMKVLPNSGCSEKRRREMEFLTLECTKKQRIVGAL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43035548 43036883 + Sed0026901.1 Sed06g1865 718408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1865 327 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 293 IPR044800 GO:0003700(InterPro)
Sed06g1865 327 CDD B3_DNA 171 259 IPR003340 GO:0003677(InterPro)
Sed06g1865 327 Pfam AP2 domain 52 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1865 327 Gene3D - 161 282 IPR015300 -
Sed06g1865 327 SMART B3_2 172 277 IPR003340 GO:0003677(InterPro)
Sed06g1865 327 FunFam AP2 domain-containing protein RAP2.8 52 109 - -
Sed06g1865 327 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677(InterPro)
Sed06g1865 327 SUPERFAMILY DNA-binding pseudobarrel domain 171 273 IPR015300 -
Sed06g1865 327 MobiDBLite consensus disorder prediction 1 46 - -
Sed06g1865 327 SMART rav1_2 53 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1865 327 ProSiteProfiles AP2/ERF domain profile. 53 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1865 327 Gene3D AP2/ERF domain 52 109 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1865 327 ProSiteProfiles B3 DNA-binding domain profile. 172 275 IPR003340 GO:0003677(InterPro)
Sed06g1865 327 MobiDBLite consensus disorder prediction 1 57 - -
Sed06g1865 327 CDD AP2 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1865 327 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1865 Sed-Chr6:43035548 Sed08g0593 Sed-Chr8:4070707 3.50E-46 dispersed
Sed03g1196 Sed-Chr3:7577351 Sed06g1865 Sed-Chr6:43035548 1.20E-104 wgd
Sed06g1865 Sed-Chr6:43035548 Sed07g2058 Sed-Chr7:35877195 2.50E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38917 PF02362 B3 2.40E-28 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1865 K09287 - csv:101203784 495.738