Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g1866 | ATGGATTTCGTCGATCATGTTCGATTTGGGATGGATCTGAGGCAATACGCAGATTCGTTGGATCAAGAACGGAGAAAGATTCAGGTCTTTCACCGCGAGCTTCCACTCTGTTTTGAGCTAGTTACCAGAGCTATTGATTGTTGCCGGCGGCGGTTGTCGGAAGTGTCGACGACGGCGAGTTCAGAGCATACTTCTAGCGACGGCCCTGTTTTGGAGTTCATTCCGATCAAAAAGGATTCTGTTGACTCCCATTTTGAAATTGATGAAGATGAACAATTGAAACCGGAGAAAAATGAATTGGGTCGTTTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCACAACCCCGATCCGCCGGTTTCAGAGGATGTTGATATGAAAACGACGTCGTCGGTTGTTGAGGTGAAAAAGAATGTCGGTGGTTGTCAACCATGTGAAAGGGAGAAAATTCAATTGAATACAGAGGCGGCGGTCGTCGTTGGTAAATCGGCCGGTTTTTCTCCGGTATCAGAGACGACGACGAGTTCGACGGCGGAAACCGCCTCCAAAGGCGGCGGCGGAACCAGTAAACGAGAAGATAAGGAATCTCAGAGTCTGCGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTTCTTCATGCGCTTCAACAACTTGGTGGCCCTCATGTTGCGACACCAAAGCAAATCAGAGAGTTAATGAAGGTGGATGGCCTCACTAACGATGAAGTGAAAAGCCATTTACAGAAATATCGATTGCACGCAAGAAGACCGACAAATTTTGCAATGCAAGAAAGCGACAGCTCATCGCCGCCCCAGCAATTCGCGGTGGTCGGAAGTATATGGGTACCGCCGCCACCGCCGCCAAAGTACACGGCGGAGACGACGGGGCAAGTAAGAACTGGGATTTATGCTCCGGTGGCCACGGCGGTGCGACGGCAGAAGATGGCGGAGGTAGAGAAGGGAAGCCGTTCGCCGTCGACTTCCTCTTCGACTCACACCACCACCGCGTCGCCGGCAGCGGCGTAG | 1035 | 51.59 | MDFVDHVRFGMDLRQYADSLDQERRKIQVFHRELPLCFELVTRAIDCCRRRLSEVSTTASSEHTSSDGPVLEFIPIKKDSVDSHFEIDEDEQLKPEKNELGRLDWLKSAQLWNHNPDPPVSEDVDMKTTSSVVEVKKNVGGCQPCEREKIQLNTEAAVVVGKSAGFSPVSETTTSSTAETASKGGGGTSKREDKESQSLRKQRRCWSSELHRRFLHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNFAMQESDSSSPPQQFAVVGSIWVPPPPPPKYTAETTGQVRTGIYAPVATAVRRQKMAEVEKGSRSPSTSSSTHTTTASPAAA | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43048076 | 43050571 | + | Sed0010552.1 | Sed06g1866 | 718409 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g1866 | 344 | MobiDBLite | consensus disorder prediction | 316 | 344 | - | - | |
Sed06g1866 | 344 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 200 | 258 | IPR017930 | - | |
Sed06g1866 | 344 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 201 | 256 | IPR006447 | GO:0003677(InterPro) | |
Sed06g1866 | 344 | MobiDBLite | consensus disorder prediction | 323 | 344 | - | - | |
Sed06g1866 | 344 | FunFam | Myb family transcription factor | 200 | 258 | - | - | |
Sed06g1866 | 344 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 12 | 320 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed06g1866 | 344 | MobiDBLite | consensus disorder prediction | 166 | 204 | - | - | |
Sed06g1866 | 344 | Gene3D | - | 200 | 257 | - | - | |
Sed06g1866 | 344 | SUPERFAMILY | Homeodomain-like | 199 | 259 | IPR009057 | - | |
Sed06g1866 | 344 | MobiDBLite | consensus disorder prediction | 186 | 204 | - | - | |
Sed06g1866 | 344 | Pfam | Myb-like DNA-binding domain | 203 | 254 | IPR001005 | - | |
Sed06g1866 | 344 | MobiDBLite | consensus disorder prediction | 166 | 184 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1866 | Sed-Chr6:43048076 | Sed08g0734 | Sed-Chr8:5379300 | 4.80E-38 | dispersed | |
Sed03g1171 | Sed-Chr3:7308494 | Sed06g1866 | Sed-Chr6:43048076 | 2.80E-62 | wgd | |
Sed06g1866 | Sed-Chr6:43048076 | Sed07g2059 | Sed-Chr7:35923777 | 4.00E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38918 | PF00249 | Myb_DNA-binding | 2.10E-05 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g1866 | - | - | - | 0.0 |