Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1866 ATGGATTTCGTCGATCATGTTCGATTTGGGATGGATCTGAGGCAATACGCAGATTCGTTGGATCAAGAACGGAGAAAGATTCAGGTCTTTCACCGCGAGCTTCCACTCTGTTTTGAGCTAGTTACCAGAGCTATTGATTGTTGCCGGCGGCGGTTGTCGGAAGTGTCGACGACGGCGAGTTCAGAGCATACTTCTAGCGACGGCCCTGTTTTGGAGTTCATTCCGATCAAAAAGGATTCTGTTGACTCCCATTTTGAAATTGATGAAGATGAACAATTGAAACCGGAGAAAAATGAATTGGGTCGTTTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCACAACCCCGATCCGCCGGTTTCAGAGGATGTTGATATGAAAACGACGTCGTCGGTTGTTGAGGTGAAAAAGAATGTCGGTGGTTGTCAACCATGTGAAAGGGAGAAAATTCAATTGAATACAGAGGCGGCGGTCGTCGTTGGTAAATCGGCCGGTTTTTCTCCGGTATCAGAGACGACGACGAGTTCGACGGCGGAAACCGCCTCCAAAGGCGGCGGCGGAACCAGTAAACGAGAAGATAAGGAATCTCAGAGTCTGCGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTTCTTCATGCGCTTCAACAACTTGGTGGCCCTCATGTTGCGACACCAAAGCAAATCAGAGAGTTAATGAAGGTGGATGGCCTCACTAACGATGAAGTGAAAAGCCATTTACAGAAATATCGATTGCACGCAAGAAGACCGACAAATTTTGCAATGCAAGAAAGCGACAGCTCATCGCCGCCCCAGCAATTCGCGGTGGTCGGAAGTATATGGGTACCGCCGCCACCGCCGCCAAAGTACACGGCGGAGACGACGGGGCAAGTAAGAACTGGGATTTATGCTCCGGTGGCCACGGCGGTGCGACGGCAGAAGATGGCGGAGGTAGAGAAGGGAAGCCGTTCGCCGTCGACTTCCTCTTCGACTCACACCACCACCGCGTCGCCGGCAGCGGCGTAG 1035 51.59 MDFVDHVRFGMDLRQYADSLDQERRKIQVFHRELPLCFELVTRAIDCCRRRLSEVSTTASSEHTSSDGPVLEFIPIKKDSVDSHFEIDEDEQLKPEKNELGRLDWLKSAQLWNHNPDPPVSEDVDMKTTSSVVEVKKNVGGCQPCEREKIQLNTEAAVVVGKSAGFSPVSETTTSSTAETASKGGGGTSKREDKESQSLRKQRRCWSSELHRRFLHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNFAMQESDSSSPPQQFAVVGSIWVPPPPPPKYTAETTGQVRTGIYAPVATAVRRQKMAEVEKGSRSPSTSSSTHTTTASPAAA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43048076 43050571 + Sed0010552.1 Sed06g1866 718409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1866 344 MobiDBLite consensus disorder prediction 316 344 - -
Sed06g1866 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 258 IPR017930 -
Sed06g1866 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 256 IPR006447 GO:0003677(InterPro)
Sed06g1866 344 MobiDBLite consensus disorder prediction 323 344 - -
Sed06g1866 344 FunFam Myb family transcription factor 200 258 - -
Sed06g1866 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 320 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1866 344 MobiDBLite consensus disorder prediction 166 204 - -
Sed06g1866 344 Gene3D - 200 257 - -
Sed06g1866 344 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Sed06g1866 344 MobiDBLite consensus disorder prediction 186 204 - -
Sed06g1866 344 Pfam Myb-like DNA-binding domain 203 254 IPR001005 -
Sed06g1866 344 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1866 Sed-Chr6:43048076 Sed08g0734 Sed-Chr8:5379300 4.80E-38 dispersed
Sed03g1171 Sed-Chr3:7308494 Sed06g1866 Sed-Chr6:43048076 2.80E-62 wgd
Sed06g1866 Sed-Chr6:43048076 Sed07g2059 Sed-Chr7:35923777 4.00E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38918 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1866 - - - 0.0