Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1866 ATGGATTTCGTCGATCATGTTCGATTTGGGATGGATCTGAGGCAATACGCAGATTCGTTGGATCAAGAACGGAGAAAGATTCAGGTCTTTCACCGCGAGCTTCCACTCTGTTTTGAGCTAGTTACCAGAGCTATTGATTGTTGCCGGCGGCGGTTGTCGGAAGTGTCGACGACGGCGAGTTCAGAGCATACTTCTAGCGACGGCCCTGTTTTGGAGTTCATTCCGATCAAAAAGGATTCTGTTGACTCCCATTTTGAAATTGATGAAGATGAACAATTGAAACCGGAGAAAAATGAATTGGGTCGTTTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCACAACCCCGATCCGCCGGTTTCAGAGGATGTTGATATGAAAACGACGTCGTCGGTTGTTGAGGTGAAAAAGAATGTCGGTGGTTGTCAACCATGTGAAAGGGAGAAAATTCAATTGAATACAGAGGCGGCGGTCGTCGTTGGTAAATCGGCCGGTTTTTCTCCGGTATCAGAGACGACGACGAGTTCGACGGCGGAAACCGCCTCCAAAGGCGGCGGCGGAACCAGTAAACGAGAAGATAAGGAATCTCAGAGTCTGCGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTTCTTCATGCGCTTCAACAACTTGGTGGCCCTCATGTTGCGACACCAAAGCAAATCAGAGAGTTAATGAAGGTGGATGGCCTCACTAACGATGAAGTGAAAAGCCATTTACAGAAATATCGATTGCACGCAAGAAGACCGACAAATTTTGCAATGCAAGAAAGCGACAGCTCATCGCCGCCCCAGCAATTCGCGGTGGTCGGAAGTATATGGGTACCGCCGCCACCGCCGCCAAAGTACACGGCGGAGACGACGGGGCAAGTAAGAACTGGGATTTATGCTCCGGTGGCCACGGCGGTGCGACGGCAGAAGATGGCGGAGGTAGAGAAGGGAAGCCGTTCGCCGTCGACTTCCTCTTCGACTCACACCACCACCGCGTCGCCGGCAGCGGCGTAG 1035 51.59 MDFVDHVRFGMDLRQYADSLDQERRKIQVFHRELPLCFELVTRAIDCCRRRLSEVSTTASSEHTSSDGPVLEFIPIKKDSVDSHFEIDEDEQLKPEKNELGRLDWLKSAQLWNHNPDPPVSEDVDMKTTSSVVEVKKNVGGCQPCEREKIQLNTEAAVVVGKSAGFSPVSETTTSSTAETASKGGGGTSKREDKESQSLRKQRRCWSSELHRRFLHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNFAMQESDSSSPPQQFAVVGSIWVPPPPPPKYTAETTGQVRTGIYAPVATAVRRQKMAEVEKGSRSPSTSSSTHTTTASPAAA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43048076 43050571 + Sed0010552.1 Sed06g1866 718409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1866 344 MobiDBLite consensus disorder prediction 316 344 - -
Sed06g1866 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 258 IPR017930 -
Sed06g1866 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 256 IPR006447 GO:0003677(InterPro)
Sed06g1866 344 MobiDBLite consensus disorder prediction 323 344 - -
Sed06g1866 344 FunFam Myb family transcription factor 200 258 - -
Sed06g1866 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 320 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1866 344 MobiDBLite consensus disorder prediction 166 204 - -
Sed06g1866 344 Gene3D - 200 257 - -
Sed06g1866 344 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Sed06g1866 344 MobiDBLite consensus disorder prediction 186 204 - -
Sed06g1866 344 Pfam Myb-like DNA-binding domain 203 254 IPR001005 -
Sed06g1866 344 MobiDBLite consensus disorder prediction 166 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1866 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1866 Sed-Chr6:43048076 Sed08g0734 Sed-Chr8:5379300 4.80E-38 dispersed
Sed03g1171 Sed-Chr3:7308494 Sed06g1866 Sed-Chr6:43048076 2.80E-62 wgd
Sed06g1866 Sed-Chr6:43048076 Sed07g2059 Sed-Chr7:35923777 4.00E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT3G24120 56.4 1.3e-76 284.3
Sed02g1495 . 12 268 G2-like Transcription Factor Family AT3G24120 57.5 2.3e-68 256.9
Sed12g0381 . 12 175 G2-like Transcription Factor Family AT3G24120 73.8 8.3e-63 238.4
Sed04g3561 . 18 166 G2-like Transcription Factor Family AT3G24120 61.2 1.5e-40 164.5
Sed01g0769 . 20 165 G2-like Transcription Factor Family AT3G24120 60.9 5.8e-40 162.5
Sed05g3314 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 7.6e-40 162.2
Sed04g3560 . 18 169 G2-like Transcription Factor Family AT3G24120 59.8 9.9e-40 161.8
Sed14g1265 . 26 144 G2-like Transcription Factor Family AT3G24120 66.4 1.6e-37 154.5
Sed01g4135 . 184 368 G2-like Transcription Factor Family AT5G16560 53.5 5.4e-41 166.4
Sed01g4134 . 184 376 G2-like Transcription Factor Family AT5G16560 51.9 2.1e-40 164.5
Sed01g2622 . 11 166 G2-like Transcription Factor Family AT5G42630 60.7 9.1e-38 154.8
Sed13g1417 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1418 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1419 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed13g1420 . 1 321 G2-like Transcription Factor Family AT5G59570 50.8 5.0e-60 229.2
Sed10g1420 . 1 353 G2-like Transcription Factor Family AT2G03500 57.1 1.6e-83 307.8
Sed03g1171 . 20 250 G2-like Transcription Factor Family AT1G25550 53.7 1.8e-51 200.7
Sed06g1866 . 15 251 G2-like Transcription Factor Family AT1G25550 52.5 3.5e-47 186.4
Sed03g1172 . 28 229 G2-like Transcription Factor Family AT1G25550 53.0 1.3e-41 167.9
Sed13g1417 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1418 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1419 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed13g1420 . 1 280 G2-like Transcription Factor Family AT3G46640 52.5 1.7e-61 234.2
Sed14g0045 . 1 299 G2-like Transcription Factor Family AT5G05090 56.5 2.9e-75 279.6
Sed03g2144 . 1 293 G2-like Transcription Factor Family AT5G05090 56.3 7.9e-73 271.6
Sed02g0794 . 1 276 G2-like Transcription Factor Family AT5G05090 53.6 4.2e-66 249.2
Sed12g1174 . 1 252 G2-like Transcription Factor Family AT5G05090 53.9 9.7e-63 238.0
Sed02g1495 . 12 316 G2-like Transcription Factor Family AT4G13640 57.5 3.8e-60 229.6
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT4G13640 51.8 4.7e-58 222.6
Sed12g0381 . 12 141 G2-like Transcription Factor Family AT4G13640 71.8 8.3e-47 185.3
Sed01g4272 . 149 402 G2-like Transcription Factor Family AT3G04450 55.3 1.9e-54 211.1
Sed01g4273 . 149 403 G2-like Transcription Factor Family AT3G04450 54.9 9.5e-54 208.8
Sed01g4275 . 149 362 G2-like Transcription Factor Family AT3G04450 52.1 5.4e-49 193.0
Sed12g0380 . 12 318 G2-like Transcription Factor Family AT3G24120 56.4 1.3e-76 284.3
Sed02g1495 . 12 268 G2-like Transcription Factor Family AT3G24120 57.5 2.3e-68 256.9
Sed12g0381 . 12 175 G2-like Transcription Factor Family AT3G24120 73.8 8.3e-63 238.4
Sed04g3561 . 18 166 G2-like Transcription Factor Family AT3G24120 61.2 1.5e-40 164.5
Sed01g0769 . 20 165 G2-like Transcription Factor Family AT3G24120 60.9 5.8e-40 162.5
Sed05g3314 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 7.6e-40 162.2
Sed04g3560 . 18 169 G2-like Transcription Factor Family AT3G24120 59.8 9.9e-40 161.8
Sed14g1265 . 26 144 G2-like Transcription Factor Family AT3G24120 66.4 1.6e-37 154.5
Sed08g1979 . 1 231 G2-like Transcription Factor Family AT1G69580 52.6 1.8e-45 181.0
Sed02g0909 . 47 248 G2-like Transcription Factor Family AT1G69580 53.2 3.3e-39 160.2
Sed02g0908 . 47 254 G2-like Transcription Factor Family AT1G69580 51.2 4.7e-38 156.4
Sed04g3560 . 1 346 G2-like Transcription Factor Family AT1G79430 58.0 2.5e-90 330.1
Sed04g3561 . 1 343 G2-like Transcription Factor Family AT1G79430 57.1 3.1e-88 323.2
Sed05g3314 . 1 362 G2-like Transcription Factor Family AT1G79430 53.7 4.6e-76 282.7
Sed01g0769 . 1 341 G2-like Transcription Factor Family AT1G79430 54.5 1.1e-74 278.1
Sed12g0380 . 40 206 G2-like Transcription Factor Family AT1G79430 61.7 2.8e-41 167.2
Sed02g1495 . 26 202 G2-like Transcription Factor Family AT1G79430 55.2 2.1e-36 151.0
Sed12g0381 . 40 169 G2-like Transcription Factor Family AT1G79430 60.8 2.7e-36 150.6
Sed10g0529 . 54 294 G2-like Transcription Factor Family AT2G01060 58.8 1.6e-53 207.2
Sed14g0045 . 1 299 G2-like Transcription Factor Family AT3G10760 62.7 1.3e-93 340.9
Sed03g2144 . 1 293 G2-like Transcription Factor Family AT3G10760 60.3 9.9e-89 324.7
Sed02g0794 . 1 276 G2-like Transcription Factor Family AT3G10760 54.4 5.8e-73 272.3
Sed14g0045 . 1 201 G2-like Transcription Factor Family AT2G40970 61.7 5.3e-63 238.8
Sed03g2144 . 1 186 G2-like Transcription Factor Family AT2G40970 62.1 2.6e-57 219.9
Sed02g0794 . 1 180 G2-like Transcription Factor Family AT2G40970 64.5 5.3e-55 212.2
Sed01g4275 . 181 373 G2-like Transcription Factor Family AT2G20400 51.4 5.4e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38918 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Sed TF