Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1868 ATGGAGATTGCGATTTATGGAAAATTAGTTCCCTCACCCAACCATGTATTCAACTCCAAACCAGGGGACAGAAGTTCTCTGTGTAAAGGACAGAAGTTCTCGGTTGTTAAATCAGCCACAACAGCAGGAATAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCTACTCCTGGAAGAGAATCTGAGTTTGATTTGAGGAGATCAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGACGACTTCAATAAACGGGAATACGTCGTTCAAGTCCTGATGAAAGTCATCCCCAAATTGACGGTCGACACTGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCCCTGGTGATCATTTGTGCTCAGGCCGATGCTGAAGAACACTGCATGAAGCTTAGAGGCAATGGGCTGTTAAGTTCAATTGAGCCTACAAGTGGTGGGTGCTGTTAA 468 45.09 MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKFSVVKSATTAGIGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAHYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43078719 43082326 + Sed0009794.1 Sed06g1868 718411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1868 155 SUPERFAMILY ClpS-like 71 149 IPR014719 -
Sed06g1868 155 Gene3D - 71 149 IPR014719 -
Sed06g1868 155 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 7 154 IPR022935 GO:0006508(InterPro)
Sed06g1868 155 Pfam ATP-dependent Clp protease adaptor protein ClpS 73 140 IPR003769 GO:0030163(InterPro)
Sed06g1868 155 FunFam ATP-dependent Clp protease adapter protein CLPS1, chloroplastic 71 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1868 K06891 - - csv:101223092 271.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1868 Sed-Chr6:43078719 Sed08g2168 Sed-Chr8:35607368 1.20E-52 dispersed
Sed06g1868 Sed-Chr6:43078719 Sed07g2063 Sed-Chr7:36066976 1.30E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g275 Blo01g00491 . Bda01g02087 . . . . . . Cmo18g01053 . . . Car18g00962 Sed06g1868 Cpe09g00281 . Bhi07g01359 Tan04g0892 Cmetu10g1801 . Hepe01g1215 . . . . . . . . . . . . . Lsi04g00281 . Chy10g01123 Cme10g00283 . . . . . Bpe02g02278 Bma01g00161 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002047 1 4 1 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 1 2 2 2 2 2 2 4 4 2 66