Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1870 ATGAGGAGCAAAACAATGCCTGCCATTAACCTGGATCAGATTCCAAACTTTGAAGAACATGTTAATGGCTTTGATCAACCTGATGTGTTGGTTGAGGAGATTGAAGGCCTGATTAGAGTTTATGGAAATGGATATGTGGAAAGATCACAGGTAGTCCCCTGTGTCTCGAATGCAATACCGGCCGAACTCGGCGTTAGTTCGTGGGATGTAGTTGTGGATAAGCTGAACAACATTTGGGCTCGTTTCTACATTCCACAGCAATGTCAGGAGAAGCTGCCTTTGCTTGTGTATTTCCATGGAGGAGGATTTTGCGTCGGCTCGGCCGCTTGGAGCTGCTACCATGAGTTCCTAGCCAAGCTATCTGCAAGAGCAGACTGTATAGTTATGTCCGTGAATTATCGCTTAGCTCCCGAAAATCCTCTTCCTGCTCCTTATGAAGATGGATTAAAGACCCTTTCATGGTTAAAACAAGTTGCACTTGGTGATGCCAAGCAGAATTGGTGGTCAAGATATTGTGACTTTACAAGAATCTACCTTAGTGGTGATAGTGCTGGTGGCAACATAGCCTTCAATGTAGCTGCTAGACTTAGTGGCAAAACAACTGCTTCTGGAGCTGTGGTCTTGAAACCTTTGGTTATCAAAGGTAACATCTTGATACAACCCTTTTTTGGTGGGGAGTCAAGGACCAAGTCAGAGAAGTTTCTGGTTCAACCGCCGCGTTCGGCATTGACGATGGCGGTTTCGGATACGTACTGGCGGTTGGCGTTGCCGTCTGGAGCAAACCGTGACCACCCGTGGTGTAGCCCTTCGGCGAAAGGGTTGTTTAAGGTGGAGGATTTGAGGGTTTTGCCTAGCTTGGTGTGTATATCAGAAATGGATATATTGAAAGATAGGAACTTGGAGTTTTGCTCTGCTTTACATAGAGAGGGTAAGCTGATAAATTATGTGGTTTATGAAGGAGTTGGCCATGCTTTTCAGGTTCTGAACAAGTCACAACTCTCTCAAACTAGGACCCTTGGAATGATAGATCATATCAAGGAATTCTTAAGTATATAG 1056 44.98 MRSKTMPAINLDQIPNFEEHVNGFDQPDVLVEEIEGLIRVYGNGYVERSQVVPCVSNAIPAELGVSSWDVVVDKLNNIWARFYIPQQCQEKLPLLVYFHGGGFCVGSAAWSCYHEFLAKLSARADCIVMSVNYRLAPENPLPAPYEDGLKTLSWLKQVALGDAKQNWWSRYCDFTRIYLSGDSAGGNIAFNVAARLSGKTTASGAVVLKPLVIKGNILIQPFFGGESRTKSEKFLVQPPRSALTMAVSDTYWRLALPSGANRDHPWCSPSAKGLFKVEDLRVLPSLVCISEMDILKDRNLEFCSALHREGKLINYVVYEGVGHAFQVLNKSQLSQTRTLGMIDHIKEFLSI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43090535 43091707 + Sed0008620.1 Sed06g1870 718413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1870 351 Gene3D alpha/beta hydrolase 47 350 IPR029058 -
Sed06g1870 351 SUPERFAMILY alpha/beta-Hydrolases 37 335 IPR029058 -
Sed06g1870 351 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 177 189 IPR033140 -
Sed06g1870 351 PANTHER ARYLACETAMIDE DEACETYLASE 36 335 IPR050466 -
Sed06g1870 351 Pfam alpha/beta hydrolase fold 95 326 IPR013094 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1870 Sed-Chr6:43090535 Sed13g2029 Sed-Chr13:25195944 4.60E-44 dispersed
Sed01g3378 Sed-Chr1:62865268 Sed06g1870 Sed-Chr6:43090535 5.60E-49 transposed
Sed03g2281 Sed-Chr3:17228201 Sed06g1870 Sed-Chr6:43090535 3.20E-47 transposed
Sed03g2352 Sed-Chr3:18957313 Sed06g1870 Sed-Chr6:43090535 7.80E-51 transposed
Sed06g0907 Sed-Chr6:11251460 Sed06g1870 Sed-Chr6:43090535 1.80E-98 transposed
Sed06g1870 Sed-Chr6:43090535 Sed07g2067 Sed-Chr7:36116424 8.00E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1870 - - - 0.0