Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1882 ATGTTAACAAAGAATAAAACTTCATCCGGTGGGACATCTTCTACCACACAAGCTGCACCAGTGTCGAAGGCACCACAGAACACTGCCCCTGCACCTGCTGCCACTCCAGTCTCAACATCTGAAGTTCCTCTACCAACTTCAGCCCCGCCGGCTACTATTACCGACTCTTCTCCTCTGGCTCCGGCACAGGCTCCAGTGCCTGCAACCACTGTTGTGCCAGAAGCTGATGTCTACAGCCAAGCAGCTTCTAACCTGGTTGCAGGTAGTAATTTGGAGGGGACTATCGAACAGATTCTTCTCATGGGTGGAGGGATTTGGGATAGGGACACTGTTGTTCGAGCACTTCGTGCGGCTTTCAATAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGCATACCTGAACAAGTTGAAGTTCCACCAGTTGCTCAAGTTCCAACTACTGTGCAAGCGACCAACCCTTCTGCTCAACCAGCACAGCCAGCCCCACCTGCGTCTATGCCATCAACTGGTCCAAATGCTAATCCATTAGATCTTTTTCCTCAGGGCCTTCCTAATTTAGCTTCCGGAGGTGCTGGATCTGGCAGTCTCGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAACCATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGACTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCTCTTGAAGGGGAAGGGAATACACCTGGGCATTTTGGTGAGGCTATGACGCAGGCTATAGCAGTAACACCGGAGGAGCGTGAAGCCATTCAACGGCTTGAGGAAATGGGTTTCGACAGAGCTCTAGTAGTGGAAGTTTTCTTCGCCTGCAACAAGAATGAGGAAATGGCTGCCAACTACCTCTTAGATCATATCCACGAATTTGAGGGTGATCAGAATTAG 975 48.92 MLTKNKTSSGGTSSTTQAAPVSKAPQNTAPAPAATPVSTSEVPLPTSAPPATITDSSPLAPAQAPVPATTVVPEADVYSQAASNLVAGSNLEGTIEQILLMGGGIWDRDTVVRALRAAFNNPERAVDYLYSGIPEQVEVPPVAQVPTTVQATNPSAQPAQPAPPASMPSTGPNANPLDLFPQGLPNLASGGAGSGSLDFLRNSPQFQALRTMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNTPGHFGEAMTQAIAVTPEEREAIQRLEEMGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGDQN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43158665 43166698 - Sed0024821.2 Sed06g1882 718425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1882 324 PRINTS DNA repair protein Rad23 signature 303 318 IPR004806 GO:0006289(InterPro)
Sed06g1882 324 PRINTS DNA repair protein Rad23 signature 288 302 IPR004806 GO:0006289(InterPro)
Sed06g1882 324 PRINTS DNA repair protein Rad23 signature 223 245 IPR004806 GO:0006289(InterPro)
Sed06g1882 324 PRINTS DNA repair protein Rad23 signature 271 287 IPR004806 GO:0006289(InterPro)
Sed06g1882 324 SMART uba_6 91 131 IPR015940 -
Sed06g1882 324 SMART uba_6 277 314 IPR015940 -
Sed06g1882 324 FunFam UV excision repair protein RAD23 homolog 268 316 - -
Sed06g1882 324 SUPERFAMILY UBA-like 88 139 IPR009060 GO:0005515(InterPro)
Sed06g1882 324 NCBIfam UV excision repair protein Rad23 1 320 IPR004806 GO:0006289(InterPro)
Sed06g1882 324 Gene3D - 187 252 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Sed06g1882 324 SUPERFAMILY XPC-binding domain 193 260 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Sed06g1882 324 SMART CBM 195 238 IPR006636 -
Sed06g1882 324 FunFam UV excision repair protein RAD23 B 187 253 - -
Sed06g1882 324 Pfam XPC-binding domain 197 252 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Sed06g1882 324 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 274 315 IPR015940 -
Sed06g1882 324 MobiDBLite consensus disorder prediction 151 175 - -
Sed06g1882 324 MobiDBLite consensus disorder prediction 1 59 - -
Sed06g1882 324 FunFam UV excision repair protein RAD23 homolog 84 134 - -
Sed06g1882 324 Gene3D - 84 134 - -
Sed06g1882 324 PANTHER UV EXCISION REPAIR PROTEIN RAD23 17 313 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Sed06g1882 324 SUPERFAMILY UBA-like 258 319 IPR009060 GO:0005515(InterPro)
Sed06g1882 324 Gene3D - 268 316 - -
Sed06g1882 324 Pfam UBA/TS-N domain 94 129 IPR015940 -
Sed06g1882 324 Pfam UBA/TS-N domain 277 312 IPR015940 -
Sed06g1882 324 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 89 132 IPR015940 -
Sed06g1882 324 MobiDBLite consensus disorder prediction 1 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1882 K10839 - - csv:101220491 455.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1882 Sed-Chr6:43158665 Sed07g2080 Sed-Chr7:36171305 1.90E-129 dispersed
Sed06g1881 Sed-Chr6:43158665 Sed06g1882 Sed-Chr6:43158665 6.30E-175 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41