Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1905 ATGGGGACGAGTTCTAAGATGGAAGGATCTTCAACTCTTCGACGAGATCCATATGAGGTGTTGTCTGTGTCAAGGGATTGTACAGAGCAGGAAATTAAAACTGCTTTTAGGAAACTTGCGCTCAAGTATCATCCTGATAAGAATGTTGGGAATCCTGAGGCTTCTGAGCTGTTCAATGAGATATCTTATTCTCACAGCATTTTATCTGATCCAGAGAAGAGAAGGCAGTTTGACAGTGCAGGATTTGAGGCTCTTGAAGTGGAAAATATGGACATGGAAGTTGACTTATCCAATTTGGGTACTGTCAATACCATGTTTGCAGCTTTATTCAGCAAGTTGGGTGTTCCCATTAAGACTACAATAGCTACCAATGTTCTTGAAGAAGCTCTGAATGGAATTGTCAACATCAGGCCTCTTCCTATTGGAACATCAGTCAGCGGGAAGGTAGATAAACAGAGTGCTCACTTCTTTGGTGTAACAATCAATGAGCAACAAGCTGCAGCAGGCATTGTAATCAGAGTTACTTCCACTGCTCAAAGCAAATTTAAGCTGCTATATTTTGAGCAAGATACCAATGGTGGTTATGGTCTAGCCTTACAGGAGGATAGTGAGAAGACGGGCAAGGTTACTTCTGTTGGGATGTATTTTTTACATTTTCAAGTATACAGGATGGATTTAACTGTGAATGCGTTGGCAATGGCCAAGGACCCTGAGGCTGCTTTTTTCAAGAGGTTGGAAGGCCTTCAGCCTTGTGAGGTTTCAGAAATAAAAGCTGGAACTCATATATTTGCTGTCTATGGCGATAATTTCTTCAAGCCTGCGACGTACACCATCGAGGCGATTTGTGCAAAATCATATCAAGAGACTACAGAGAAGCTTAAAGATATTGAAGCTCAAATTTTAAGAAAGCGAAATGAGTTGCGCCAATTCGAAACCGAATATAGGAAGGCAGTTGCTCGCTTTCAAGAAGTTACGGACCGATACACTCGGGAAAAACTATCTGTCGACGAACTTCTTAAAAACAGAGAGTACATTCACTCGTCTTTCACTGTTTCCAGGCCAGCATACCTTTGCGAGGTTGCTAGTGGTTTAAGTAATGGAAAACTTGATGATTCAAAAGTTTACACTTCTGGAGAAGATGGGGGCTCAGATGGGAAGGAAAAATCTACCAAGAAGAAATGGTTTAGTCTCAAAGGATCAGACAAGAAGCTTGGTTGA 1218 41.54 MGTSSKMEGSSTLRRDPYEVLSVSRDCTEQEIKTAFRKLALKYHPDKNVGNPEASELFNEISYSHSILSDPEKRRQFDSAGFEALEVENMDMEVDLSNLGTVNTMFAALFSKLGVPIKTTIATNVLEEALNGIVNIRPLPIGTSVSGKVDKQSAHFFGVTINEQQAAAGIVIRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSVGMYFLHFQVYRMDLTVNALAMAKDPEAAFFKRLEGLQPCEVSEIKAGTHIFAVYGDNFFKPATYTIEAICAKSYQETTEKLKDIEAQILRKRNELRQFETEYRKAVARFQEVTDRYTREKLSVDELLKNREYIHSSFTVSRPAYLCEVASGLSNGKLDDSKVYTSGEDGGSDGKEKSTKKKWFSLKGSDKKLG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43413232 43418551 - Sed0014262.1 Sed06g1905 718448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1905 405 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Sed06g1905 405 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 391 IPR052812 -
Sed06g1905 405 MobiDBLite consensus disorder prediction 373 390 - -
Sed06g1905 405 PRINTS DnaJ domain signature 18 36 IPR001623 -
Sed06g1905 405 PRINTS DnaJ domain signature 73 92 IPR001623 -
Sed06g1905 405 PRINTS DnaJ domain signature 36 51 IPR001623 -
Sed06g1905 405 PRINTS DnaJ domain signature 53 73 IPR001623 -
Sed06g1905 405 SMART dnaj_3 15 73 IPR001623 -
Sed06g1905 405 FunFam Chaperone protein dnaJ 16 2 98 - -
Sed06g1905 405 MobiDBLite consensus disorder prediction 368 390 - -
Sed06g1905 405 CDD DnaJ 16 70 IPR001623 -
Sed06g1905 405 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Sed06g1905 405 SUPERFAMILY Chaperone J-domain 15 88 IPR036869 -
Sed06g1905 405 Coils Coil 286 327 - -
Sed06g1905 405 Pfam DnaJ domain 16 78 IPR001623 -
Sed06g1905 405 Gene3D DnaJ domain 2 99 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1905 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1905 Sed-Chr6:43413232 Sed11g1644 Sed-Chr11:31734123 2.00E-168 dispersed
Sed11g1643 Sed-Chr11:31734123 Sed06g1905 Sed-Chr6:43413232 8.00E-173 wgd
Sed06g1905 Sed-Chr6:43413232 Sed07g2166 Sed-Chr7:37196467 1.30E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g332 Blo01g00506 . Bda01g02065 . . . Bma14g01905 . Cmo04g01569 Cmo18g01016 . Cma18g01005 Car04g01551 Car18g00927 Sed06g1905 Cpe09g00315 Cpe01g01335 Bhi07g01301 Tan04g0834 Cmetu09g0646 Lac13g0518 Hepe01g1173 . . Cla05g02283 Cam05g2455 Cec05g2477 Cco05g2520 Clacu05g2451 Cmu05g2312 Cre05g2430 Cone13ag0815 Cone19ag0822 Cone6ag0433 Cone9ag0450 Lsi04g00239 Csa05g02067 Chy10g01164 Cme10g00241 . . Bda07g01722 . . Bpe02g02257 Bma01g00180 . . Cmo04g02170 Cmo15g00961 Cma04g02074 Cma15g00922 Car04g02012 Car15g00864 Cpe13g00398 . Bhi12g00831 . . . . . Lcy10g1477 Cla01g00569 Cam01g0595 Cec01g0584 Cco01g0610 Clacu01g0588 Cmu01g0560 Cre09g1949 Lsi09g00617 . Chy09g00895 Cme09g00772
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001619 2 4 2 1 1 2 3 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 1 2 2 3 5 1 70