Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1907 ATGTTAACCACGTTTGAACCGCCCATTCACAACACCGACGGTGGCGGAGCCGCCGCCGCCGCCGCCATGGCTGCTCCTGCTCCGAACTCGTCAATGGAATCATGTTCGTCTCCTATTCTGATATTTGTCTTCTTTCACAAGGCGATTCGCGCTGAGCTCGATCACTTCCATCGCGACGCCATTGAATTCGCTACCAACCAGCAACCTGGCGGGGATATTGGGCCGTTGTTGCAGCGCTACCACTTTCTTCGTGCGGTTTACAAGCATCACTGTAACGCCGAGGATGAGGTCATCTTCCCGGCTCTAGATATGAGAGTGAAAAATGTTGCAAGTACTTATTTCCTTGAACATGAAGGGGAAAGTGTTCTGTTTTGCCAATTGCTTGAGCTTCTGAATTCAAATGTCTTGGAGGAAGGAAGCTATAAGAGGGAGTTGTCATCTTGTGTCAGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAAGAGGAACAGGTGTTTCCATTACTTGTCGAGAAGTTCTCTTTTGAAGAACAGGCATCATTAGTATGGAAATTTCTTTGTAGTATACCTATTAATATGCTGGAAGTCTTTCTTCCATGGCTTTCTTCCTCGATATCTCCAGATGAACATCAGCTTATGTGCAAATGCTTGAGCAAAATTATTCCCGAGCAAAAGCTTCTTCATAGGGTAATATTTTCATGGATCGAGGATGCAAGAACAGCTCGTGCCAATCAAAGTTTGTATGGCGATAATTTAGAGTTTCAATGTCTAGACTCTCGGGTCTATGATCTTGTATGTAAGGTGGATAAGGGGAATGACGCATCTGAATTAACTAGAACTGGTAAAAGGAAATATGTGGAGCAGAGTAATTTTAGCTATTCTACTGTTTCAGTCGCTTGTCCCATTAATGAAATATTACATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCGGAGGCAGCTAGAAACCTAAAATTGTCATCTGATTTTTCTGAGTTGTCTGCATTTAAGGAGAAGCTGCAGTTTATTGCAGAAGTCTGCACCTTTCACTGCATTGCTGAGGATAAAGTTATATTCCCTGCTATAGATGCTGAACTATCTTTTGCCGATCAGCATGCGGAAGAAGAAATTCAATTTGATAAGCTTAGGCAGTTAATAGATAACATCCAGGCTGATGAAGCCAAATATTCTTCTGCTGAAATTCATAAAAATTTAAGTTCTCATGCTGATCAAATTTTCAAGACTATCCAGAAGCACTTTCGTGATGAGGAGTTGCATGTTCTTCCACTTGCTCAGAAGCATTTTGGAGCCCAAAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATTATGCCTTTGAAATGGATAGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCAAGATCTTTTCTTCAGAATATGCGAATGGCAGCTCCAGTGTCTGATCATGCACTCATTACACTATTTTCTGGTTGGGCATGCAATGGCCATCCCAGGAGCATTTGCATTTCTGCAAGTGCTATTAGCCGTTGTCCTGAACGGGTGTTGGCCGAAGATGAAGAACCGTGCTCTTCCTTTACTTCTGCCAATGGAAAACCTTCATGCAATCAGGGAACTGAATGTGCCAGGCCATCCAAGTGTGGGAAGGCAGTATGTCATGGGGACTTAAATGGCCATCTTTCTTTGAAAAATCCAAGCAAAAAACTTCATTTCAGTTGTGTAAAAAAAATTTCTTGTGTCCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGGTCTCTGGCAGCAGCAAAATCTCTGCGTTCTTTGTGTGTTGGCCCCAATGCTCCTTCTCTCAACTCCAGTCTTTTTAGTCTGGAAAATGATCAAATCTCTTGTGGCAGTGGTTCCAAGTCACGGCCTATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGCGAATCTTGGTGATTGTGATGATACTTTCTTTAGGCAATTTTGCGGTAGGTTTTATCTGTTGTGGGGTCTTTATAAAGCTCATAGCAATGCTGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAACTCTTCATAATGTGAGCCACTCTTATACATTAGACCACAAGCAGGAGGAAGAGCTATTTGAAGGTATTTCTACTGCACTTTCAAAGCTGACAAACCTTCGCAGAGACTTGACTGGTAAGAAAAAGTGCAACTATTCAGACAGGATGAACTCTCATACCTCTGATATTAATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAAGGCATGTGCAGATCAATTAGAGTGACACTTGACCAACATATTTTTCGTGAAGAATCGGAATTGTTGCCGTTGTTCCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTAGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTGAGGAGGAGCAAAACAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAATGACTGGCTAAATGAATGGTGGGAAGGACCTGCTGTATCTCCACATTATATGGAACCCGTCAGTCATATTTCTGGAGGTACTGATTCCCATGGCGTCTGTGACCAAAAAAATGGTTCAGTTTTCAAGCCTGGATGGAATGAGATTTTTAGGATGAATGAAAATGACCTTGAATCAGAAATAAGAAAGGTTGCCAGGGATTCAACCATTGACCCTAGGAGAAAAGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAAATGCTACCCCAAGCAACTACAGATGAAAACTCAGATGCAAAAGACCTGATCTTAAGTGCCCCTTCATTTCGTGATCCTGAGAAACAGATTTTTGGGTGTGAGCACTATAAAAGAAATTGTAAACTGCTTGCAACTTGTTGTGGCAAGTTGTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCTACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGCAGTCTCTCTATGGCGAAGTACTACTGTAGTATTTGCAAACTTTTCGATGATGAAAGGGATGTCTATCATTGCCCTTTCTGCAATATATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTTCACTGTATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCACAAGTGCCAAGAAAGGGGCCTAGAAACAAACTGTCCCATCTGTTGTGATTTTTTGTTCACATCTAGTGAAAGTGTTAGAGCTCTCCCTTGTGGCCATTTCATGCATTCAGCTTGTTTCAAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAATCCTTGGGAGATATGACGGTATGGAAATTTCTATCTCAAACAAAAGTGGTCCTGATATATTATGACATAAGGTTTTTTATTCATTCAAGGCACTTCAAGCTCAAGGTTGACTCGTTGATGCATGTATACTTATACAAACTTGTGAAATTGAATTTAGCTATAATTATCTGGAAAAGCCGATTGTCTTAA 3669 40.83 MLTTFEPPIHNTDGGGAAAAAAMAAPAPNSSMESCSSPILIFVFFHKAIRAELDHFHRDAIEFATNQQPGGDIGPLLQRYHFLRAVYKHHCNAEDEVIFPALDMRVKNVASTYFLEHEGESVLFCQLLELLNSNVLEEGSYKRELSSCVRALQISICQHMFKEEEQVFPLLVEKFSFEEQASLVWKFLCSIPINMLEVFLPWLSSSISPDEHQLMCKCLSKIIPEQKLLHRVIFSWIEDARTARANQSLYGDNLEFQCLDSRVYDLVCKVDKGNDASELTRTGKRKYVEQSNFSYSTVSVACPINEILHWHNAIKKELNSIAEAARNLKLSSDFSELSAFKEKLQFIAEVCTFHCIAEDKVIFPAIDAELSFADQHAEEEIQFDKLRQLIDNIQADEAKYSSAEIHKNLSSHADQIFKTIQKHFRDEELHVLPLAQKHFGAQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMRMAAPVSDHALITLFSGWACNGHPRSICISASAISRCPERVLAEDEEPCSSFTSANGKPSCNQGTECARPSKCGKAVCHGDLNGHLSLKNPSKKLHFSCVKKISCVPGLGVDDNNLGMRSLAAAKSLRSLCVGPNAPSLNSSLFSLENDQISCGSGSKSRPIDNIFKFHKAISKDLEYLDNESANLGDCDDTFFRQFCGRFYLLWGLYKAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEELFEGISTALSKLTNLRRDLTGKKKCNYSDRMNSHTSDINDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEEEQNKMMDTLKQATRNTMFNDWLNEWWEGPAVSPHYMEPVSHISGGTDSHGVCDQKNGSVFKPGWNEIFRMNENDLESEIRKVARDSTIDPRRKDYLIQNLMTSRWIASQQMLPQATTDENSDAKDLILSAPSFRDPEKQIFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPIGSVCTTPSCGSLSMAKYYCSICKLFDDERDVYHCPFCNICRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFKAYTCSHYICPICSKSLGDMTVWKFLSQTKVVLIYYDIRFFIHSRHFKLKVDSLMHVYLYKLVKLNLAIIIWKSRLS 1222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43421790 43430955 - Sed0008110.2 Sed06g1907 718450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1907 1222 Gene3D nmb1532 protein domain like 305 450 - -
Sed06g1907 1222 Gene3D nmb1532 protein domain like 35 189 - -
Sed06g1907 1222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1112 1161 IPR013083 -
Sed06g1907 1222 CDD RING-H2_Pirh2-like 1116 1159 - -
Sed06g1907 1222 ProSiteProfiles Zinc finger CHY-type profile. 981 1050 IPR008913 GO:0008270(InterPro)
Sed06g1907 1222 SUPERFAMILY RING/U-box 1116 1164 - -
Sed06g1907 1222 Coils Coil 376 396 - -
Sed06g1907 1222 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 679 1171 - -
Sed06g1907 1222 Pfam Hemerythrin HHE cation binding domain 42 171 IPR012312 -
Sed06g1907 1222 Pfam Hemerythrin HHE cation binding domain 644 805 IPR012312 -
Sed06g1907 1222 Pfam Hemerythrin HHE cation binding domain 303 435 IPR012312 -
Sed06g1907 1222 FunFam Zinc finger protein-related isoform 1 1112 1161 - -
Sed06g1907 1222 SUPERFAMILY Zinc hairpin stack 1054 1109 IPR037275 -
Sed06g1907 1222 SUPERFAMILY CHY zinc finger-like 980 1044 IPR037274 GO:0008270(InterPro)
Sed06g1907 1222 FunFam Zinc finger protein BRUTUS 639 869 - -
Sed06g1907 1222 SMART ring_2 1117 1158 IPR001841 -
Sed06g1907 1222 ProSiteProfiles Zinc finger RING-type profile. 1117 1159 IPR001841 -
Sed06g1907 1222 Pfam Ring finger domain 1116 1158 IPR001841 -
Sed06g1907 1222 CDD Hr-like 648 804 - -
Sed06g1907 1222 Gene3D nmb1532 protein domain like 639 868 - -
Sed06g1907 1222 Pfam CHY zinc finger 988 1056 IPR008913 GO:0008270(InterPro)
Sed06g1907 1222 ProSiteProfiles Zinc finger CTCHY-type profile. 1053 1116 IPR017921 -
Sed06g1907 1222 CDD Hr-like 306 433 - -
Sed06g1907 1222 CDD Hr-like 41 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1907 Sed-Chr6:43421790 Sed12g2088 Sed-Chr12:31605791 0.00E+00 dispersed
Sed06g1906 Sed-Chr6:43421790 Sed06g1907 Sed-Chr6:43421790 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1907 K16276 - csv:101217252 1991.47