Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1908 ATGGCGGCGTCTACTCTACTCTCTCATTTCGCCCTTTTTCTCTGTTTTCTCCCTTTCACACAGCTCTACGCCTCTTCTAACCCAGATTTAGACGCTTTAATGGCGTTCAAATCGGCGTCGGACCAAGGAAATAAACTCGCTACATGGAACTCTACATCGAGCCCATGTGTTTGGGATGGAGTTTCGTGTCTCAGAAACAGGGTTTCGAGGTTGGTTCTTGAGAATCTTGATCTCACCGGCTCAATCGAACCGCTCGCTGGTTTAACCCAGTTGCGTGTTCTGAGCCTCAAGCGGAACCGTCTCTCCGGTCACATTCCTGATTTCTCCAACTTCACAGCTCTCAGATTAGTTTTTCTCTCGTACAATGAATTTTCCGGCGAGTTTCCGGCGTCTTTGCTGTCTCTTGTGCGGCTCTACCGTCTCGATCTCTCTCATAATAACTTCACCGGAGAGATTCCGGCGAATGTTGACCGTTTGACTCATCTCCTCACTCTCCGGCTCGAAGAAAATCGATTTTCTGGTCTGATTTTGGGACTGAACCTCCCGAATCTCCAGGATTTCAACATTTCAGCGAATGGGTTTTCCGGCGAAATCCCTAACTCGCTGTCGAGCTTTCCGGCGTCTTCTTTCGGCCGGAATTTGGGGTTGTGTGGATCTCCATTGCAGAGATGCAAGAGCATTGTGAGTAACCCGACGGAACCCGGAATCGCGTCGCCGTTAACACCGCCGGAGAATCTCACGGTTTCGTCTTCTCCGACGTCGATTCCAGGAGTAGCAGCCGAAACATCGCCGGGAAACACCCATCATCACGGCAGCGGGAGGATAGGTTCTCTAGCCCTAATCGCCATAATTCTGGGCGACGTTCTGGTGTTGGGGTTAGTCTCGCTTCTTCTCTACTGCTATTTCTATCGGAAATCCTCCGGCGAGGCCCGTGACCGGAAGGAATCGAAGCTTGTGGAAACCGAGAAGATTGTGTACTCTTCCAGCCCGTTTCCAGCCTCGGCCGGGACCGATCGAGGCCGGATGGTGTTCTTCGATGGGGTTAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCGGCGGAAATGCTCGGAAAAGGCGGGTTTGGAACTTCGTATAAGGCGATTCTTGATGATGGGAATGTGGTGGCGGTGAAGCGGCTGAAAGACGCTCAAATTGGGGGGAAACGAGAGTTTGAGCAGCAAATGGAGGTTTTGGGGATGTTGAGACATGGGAATATTGTTAGCTTGAGAGCTTACTATTTTGCGAGAGAGGAGAAGCTTTTGGTTTATGATTACATGCCCAATGGCAGCTTGTTCTGGCTTCTTCATGGGAACAGAGGTCCGGGCCGGACGCCATTGGACTGGACAACAAGGTTAAAGATCGCCGCCGGAGCGGCGAGAGGTTTAGTCTTCATTCACAGCTCAACCAAATCCCCAAAGCTCGTTCATGGCAATGTGAAATCAACAAATGTGTTAATAGACCAATCTGGAAATCCCCGAATTTCCGATTTCGGATTAGCCCTTTTCACTCCGCCGTCCACTCCTCGATCCAACGGCTACCGGTCGCCGGAATCCGGCGAGGGGCGGAAATTGACGCAGAAATCCGACGTGTATTCATTTGGGGTTCTTCTCTTGGAGCTGCTCACCGGGAAGTGTCCCGCCGTCGTGGACAACGGCGGCGGGTATGGCGGAGGGTACGGCGGCGTTTTGGACCTGCCGAGGTGGGTTCAGTCGGTGGTTCGAGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATATAAAGACATTGAAGAGGAAATGGTGGGGCTGTTGCAGATTGCCATGGCGTGTACGGCGGCGGCGCCGGAGCAACGGCCGAAGATGAGCCACGTGGTGAAGATGATCGATGAGCTTCGTGGGGTGGAGGTTTCGCCGTTTCGCGACGGCGATGACTCTGTGACGGAGTCGCCGTCGGTGTCGGAGGGAACTTGCGGCGGCGGCGGAGTTAGCCAGTGA 2007 53.06 MAASTLLSHFALFLCFLPFTQLYASSNPDLDALMAFKSASDQGNKLATWNSTSSPCVWDGVSCLRNRVSRLVLENLDLTGSIEPLAGLTQLRVLSLKRNRLSGHIPDFSNFTALRLVFLSYNEFSGEFPASLLSLVRLYRLDLSHNNFTGEIPANVDRLTHLLTLRLEENRFSGLILGLNLPNLQDFNISANGFSGEIPNSLSSFPASSFGRNLGLCGSPLQRCKSIVSNPTEPGIASPLTPPENLTVSSSPTSIPGVAAETSPGNTHHHGSGRIGSLALIAIILGDVLVLGLVSLLLYCYFYRKSSGEARDRKESKLVETEKIVYSSSPFPASAGTDRGRMVFFDGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQIGGKREFEQQMEVLGMLRHGNIVSLRAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLVFIHSSTKSPKLVHGNVKSTNVLIDQSGNPRISDFGLALFTPPSTPRSNGYRSPESGEGRKLTQKSDVYSFGVLLLELLTGKCPAVVDNGGGYGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTAAAPEQRPKMSHVVKMIDELRGVEVSPFRDGDDSVTESPSVSEGTCGGGGVSQ 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43437395 43440551 - Sed0027260.1 Sed06g1908 718451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1908 668 Pfam Protein tyrosine and serine/threonine kinase 362 631 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1908 668 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Sed06g1908 668 Gene3D Ribonuclease Inhibitor 179 225 IPR032675 -
Sed06g1908 668 MobiDBLite consensus disorder prediction 234 269 - -
Sed06g1908 668 FunFam Nuclear pore complex protein NUP107 26 178 - -
Sed06g1908 668 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 642 - -
Sed06g1908 668 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Sed06g1908 668 PANTHER OS05G0588300 PROTEIN 11 638 IPR050994 -
Sed06g1908 668 MobiDBLite consensus disorder prediction 641 668 - -
Sed06g1908 668 SUPERFAMILY L domain-like 45 205 - -
Sed06g1908 668 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Sed06g1908 668 Pfam Leucine Rich Repeat 138 157 IPR001611 GO:0005515(InterPro)
Sed06g1908 668 MobiDBLite consensus disorder prediction 648 668 - -
Sed06g1908 668 ProSiteProfiles Protein kinase domain profile. 358 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1908 668 MobiDBLite consensus disorder prediction 242 269 - -
Sed06g1908 668 Gene3D Transferase(Phosphotransferase) domain 1 434 647 - -
Sed06g1908 668 FunFam pollen receptor-like kinase 1 329 433 - -
Sed06g1908 668 Gene3D Phosphorylase Kinase; domain 1 336 433 - -
Sed06g1908 668 SUPERFAMILY Protein kinase-like (PK-like) 362 632 IPR011009 -
Sed06g1908 668 CDD STKc_IRAK 364 635 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2935 Sed-Chr4:40926212 Sed06g1908 Sed-Chr6:43437395 4.40E-69 dispersed
Sed06g1908 Sed-Chr6:43437395 Sed08g0731 Sed-Chr8:5339585 4.80E-103 dispersed
Sed14g0175 Sed-Chr14:2025355 Sed06g1908 Sed-Chr6:43437395 1.30E-49 dispersed
Sed02g0573 Sed-Chr2:43436816 Sed06g1908 Sed-Chr6:43437395 2.30E-108 transposed
Sed11g1647 Sed-Chr11:31758718 Sed06g1908 Sed-Chr6:43437395 1.70E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79390 PF07714 PK_Tyr_Ser-Thr 1.50E-33 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1908 - - - 0.0