Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1909 ATGGCTTCCAGAGAAGGAAGACGCCATCATCAACATCACAATCTGGTTCCTCTTGCTGCTTTGATCAGTAAAGAAGTTAGGAATGAGAGATTGGAAAAACCAACTTTGAGATATGGAAATGCAGGGCAGTCTAAGAAGGGGGAGGATTATTTTTTGATGAAAACTGATTGTCAGCGAATTTCTGGGAATCCTTCATCCAGTTTCTCTGTGTTTGCTATATTTGACGGACACAATGGAAATGCTGCAGCAATTTTCACAAGGGAGCATTTGTTGAGTCATGTTTTAGGGGCGCTTCCCCGTCGTCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCGCGAGCGTTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAAAGCAAAGGTGAAACTTCTGGAACTACAGCTACATTTGTAATCATCGATGGATGGACAGTGACAGTTGCATCGGTTGGAGATTCTCGATGTATTTTAGATACTCAGGGTGGTGCTGTCTCTGCTTTAACGGTCGATCATAGACTTGAAGAGAATGTTGAAGAGAGGGAACGCGTGACTGCAAGCGGCGGGGAAATTGGAAGATTAAGCATTGTTGGTGGTGTTGAGATTGGCCCCCTCCGATGTTGGCCTGGAGGCTTATGCCTTTCTCGATCGATTGGAGACATGGACGTTGGAGAGTTTATTGTTCCAATTCCATTCGTTAAACAAGTAAAGTTATCAAAAGCTGGTGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGACGCTCTATCATCCGATATGGCTACAAAGTCCTGCCGTGGGCTACCAGCCGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGCTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCCGATAATTCCGCTGAGTCTTCCCCTCCGAAGAAACAAAGCATACTGAAATCTCTATTATTTAGGAAAAAGTCTCACAGCTCTAACCAGCTATCGAAGAGTCTATCCGCTATCAGTCTCGTGGAAGAATTATTTGAAGATGGCTCCGCGGTGCTGGCTGAAAGGCTTGGATCTGGACATGGCACACCCAGCCTATTCACATGTGCTGTATGTCAAGTAGATCTTGCTCCTAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCAACCAGCTTGAAGCCATGGCAGGGGCCTTTCCTGTGTGTCGATTGTCGAAACAAGAAGGACGCCATGGAAGGCAAACGTCCGAGCGGGGTGAGAGTGGCGTAG 1275 46.75 MASREGRRHHQHHNLVPLAALISKEVRNERLEKPTLRYGNAGQSKKGEDYFLMKTDCQRISGNPSSSFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRRLGQEEWLQALPRALVAGFVKTDKEFQSKGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGVEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSKAGGRLIIASDGIWDALSSDMATKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAESSPPKKQSILKSLLFRKKSHSSNQLSKSLSAISLVEELFEDGSAVLAERLGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSLKPWQGPFLCVDCRNKKDAMEGKRPSGVRVA 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43446756 43450983 - Sed0008917.1 Sed06g1909 718452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1909 424 Gene3D - 37 306 IPR036457 -
Sed06g1909 424 SMART PP2C_SIG_2 32 299 IPR001932 -
Sed06g1909 424 SMART PP2C_4 27 297 IPR001932 -
Sed06g1909 424 SUPERFAMILY PP2C-like 39 299 IPR036457 -
Sed06g1909 424 Pfam Protein phosphatase 2C 62 283 IPR001932 -
Sed06g1909 424 PANTHER PROTEIN PHOSPHATASE 38 298 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed06g1909 424 ProSiteProfiles PPM-type phosphatase domain profile. 30 299 IPR001932 -
Sed06g1909 424 CDD PP2Cc 42 299 IPR001932 -
Sed06g1909 424 FunFam probable protein phosphatase 2C 5 37 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1909 Sed-Chr6:43446756 Sed07g2106 Sed-Chr7:36563505 1.50E-203 dispersed
Sed06g1909 Sed-Chr6:43446756 Sed07g2105 Sed-Chr7:36563505 1.50E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1909 - - - 0.0