Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1921 ATGGACACCAAGAAATTCATCCAAATGGTTGAGGAGAAGAAGAAGAGAGCTTTGGAGAAGAAGGAAGCTCCATTAAAATGGGAGCAAAAACTTGAAGCTGCTGCAAAGGCAAAGGCTGATGCCGAAGCCAAAGCCGAAGCCAAAGCGAGGAAGCATAAGGCTGCCAAGCACAAAAGAAAATCAGTATCAGATTCTGATACCGATACAGAAAGTGATAGCCACGAGAGAGGACGGAAAGCAAGTAAGAGAACTCATAAGAAGCACAGGAAACATAGCCACGCGGATTCTTACGACAGTGAGAAGAGAAAGGATAGAAAGTCAAAGCGAAAACTAAAGCGGCGTCTCTCATCTCATGATGACAGCAGTGATGAATTCGATGGCCACTCTGAAGAAGATAGGAGGAAGAAGAAAAACCATAGAAAACATGACCATTCAAGATCTGATGAAAGTTATTCAAGTTCCAGCGATGATGATGTTGAGACAACAAAAAGAAGTCATTCCAGGCATCGCAGGCATCTCAAGCAAATTGACCATTCATCATCTGATTATTCTAGCAGTGAGGATGATACTGGTTTGCGAAAAAAAAGGCGTGGAAGGCACCCCAGGCCTCACCATCGACATGAGCGATCCCATCGATCAAGTAGTATGGATTCATTAGATTGCAATAACCGGAGGCGTGATGCTAGAAGCCAGTCTTCAGGGAAGTCTTCTGATGATAATCATGAAGAACCAGCATTACAATCCAGGCACAAGAAAGGTATTCACCATCACAAGCACAGGCTCCACCACTCAGGTGAGGAGAAGAAGCATTTGTCCAATGGTTTGACCCAGACTGAAGAAAAATATGATAACAATGATCCTGATGAAACTAACCATGACCATTCTAATGATTCTCATTAA 900 43.22 MDTKKFIQMVEEKKKRALEKKEAPLKWEQKLEAAAKAKADAEAKAEAKARKHKAAKHKRKSVSDSDTDTESDSHERGRKASKRTHKKHRKHSHADSYDSEKRKDRKSKRKLKRRLSSHDDSSDEFDGHSEEDRRKKKNHRKHDHSRSDESYSSSSDDDVETTKRSHSRHRRHLKQIDHSSSDYSSSEDDTGLRKKRRGRHPRPHHRHERSHRSSSMDSLDCNNRRRDARSQSSGKSSDDNHEEPALQSRHKKGIHHHKHRLHHSGEEKKHLSNGLTQTEEKYDNNDPDETNHDHSNDSH 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43514979 43518089 + Sed0020048.3 Sed06g1921 718464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1921 299 MobiDBLite consensus disorder prediction 114 133 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 33 299 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 33 49 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 250 265 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 59 78 - -
Sed06g1921 299 Coils Coil 31 58 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 210 249 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 175 194 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 266 299 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 195 209 - -
Sed06g1921 299 PANTHER OS01G0120700 PROTEIN 194 295 - -
Sed06g1921 299 MobiDBLite consensus disorder prediction 143 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1921 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1919 Sed-Chr6:43514979 Sed06g1921 Sed-Chr6:43514979 6.80E-57 dispersed
Sed06g1921 Sed-Chr6:43514979 Sed07g2133 Sed-Chr7:36876932 3.40E-08 dispersed
Sed06g1920 Sed-Chr6:43514979 Sed06g1921 Sed-Chr6:43514979 6.80E-57 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g394 . . . . . . . . Cmo04g01542 . . . Car04g01530 . Sed06g1921 . Cpe01g01313 Bhi07g01245 Tan04g0785 Cmetu10g0428 . Hepe01g1144 . . Cla05g02259 Cam05g2428 Cec05g2445 Cco05g2489 Clacu05g2417 Cmu05g2284 Cre05g2402 . . . . Lsi04g00202 Csa05g02665 Chy10g01196 Cme10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .