Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1949 ATGGCTTCCGTCGGCTGCGGCGGTGGCGGCGGCGAGGTTGAAGTCAAGGCAGTGTTCGTAGGAGCAGGCTGTAACAGAATCGTGAACAACGTTTCTTGGGGAGCCTGTGATTTGGTTGCTTTTGGCGCTCGAAACGCCGTCGCTATTTTCTCTCCCAAGTCTGCACAAATTTTGACGACCCTTCCCGGCCACAACGCATCTGTGAACTGCACTCATTGGCTTCCTAGTAATAAGTATGCGTTTAGAGCCAAGCATTTGAACTGTCATTTTCTGCTCTCTGGTGACTCTGATGGTGTCATTCATTTATGGGAATTATCGCTTCTGGATCAGAAGTGGAGAAATGTTTTACAACTGCCAAAATCTCACAAGAAAGGCATCACATGTATTACTGCGCATGTAGTTTCTGAAACGGTGGCAATTGTTGCTTCTGCTTCTTCAGATGGTTCAATCTGTGTTTGGGAGGTGACTTTTCCATCTACATATGAAGGTGATTGTACATTGGTGTTGCTCGACTCGCTCTTGGTTGGTTCAAAATCTATGGTGGCGCTTTCATTAGCTGAATTGCCTGGAAATGGCAATCATCTGGTCCTGGCAATGGGAGGTTTGGATAATAAGATTCATCTATATTGCGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTAAAAGGACATACAGATTGGATTAGAAGTCTGGATTTCTCTTTGCCCATGCACAAAAATGGAGAAGCAAGCAGCATTATGCTTGTAAGTTCGTCTCAGGATAGAGGCATACGCATATGGAAGATGGCTCTTCACGGTTCTTTAGCCGACGTGAACGGAGGATGCAAAAAAGAGGAAATAAGTTTAACATCTTATATTCAAGGTCCTATTTTTACTGCCGGACCATGTACTTACCAGGTATCATTAGAATCTCTTCTGATTGGACATGAGGATTGGGTATATTCAGTCCAATGGCAGCCTCCTTCAGCTGCAGAAACGGATGGGGTTCCCTGCTATCAATCTGAAAGCATCTTATCTGCATCAATGGACAAGACAATGATGATTTGGAAACCAGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACCGTTGGAGAGTTAAGTCATTGTGCTTTAGGGTTTTATGGTGGCCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGAAATGTTGGTATCAGTTCAGATAATTGGAAACCTCAAAAGGTTCCTTCAGGACATTTTGCACCTGTCATGGATATTTCATGGGCGAGATCTGGTGATTATATTATTTCAGTCAGTCATGACCAGACAACTCGGATTTTTGCTCCTTGGAAAAACGTCAATTCTCTTGAAGGAGGTTCTTGGCATGAAATAACTCGACCTCAAGTCCATGGACATGATATTAACTGTGTCACCATAATACAAGGAAAGGGGAACCATCGCTTTGTCAGTGGAGCTGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTCTGAAGACATTGAGTCACGCCACACTGCAGAATTTTGTTGGCACGGAAGATGATCTTATGGATGTTCAAATTTTGGGTGCTAATATGTCGGCTCTTGGGCTTTCACAGAAACCTATTTTTTCTCACTCTGCTGATAAGACTCCTGCCGGGGGTGGAAATGAAGGTCTCGACACCCTTGAAACTATTCCTGATGCAGTTCCTGTTGTTCTGACTGAACCTCCCATCGAAGATCAACTAGCATGGCATACCCTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTGTTTTCTCTATGTTGTGATCACAAGGGGAAGCTTGTTGCTTCATCGTGTAAGGCACAAACGGCATCGGTAGCAGAAATATGGCTTTGGGAAGTCGGTTCGTGGAAGGCAGTCGGCCGTTTGCAATCTCACAGCTTAACAATAACACAGATGGAGTTTTCCTATGATGACAGCATGCTATTGTCGGTCTCGAGGGATCGCCAGTTTTCGGTTTTTAAAATCCAGAGAACAGAGTCTGATGAAATCCACCATGAGCTTATATCAAGGCAAGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCACATGGTCATGAGTTTGCAACAGGCTCTAGGGACAAGACTGTGAAGATATGGACCGTGACACCCGATTCTTCAGTTAGGCAGCTAGCAACTCTGTCGCAGTTCAAATCTAGCATCACCGCCTTATCGTGGGTCGGTCTCAATTCCGAGAGCAGTGGACTCCTTGCAGTTGGAATGGAGAGTGGTCTCCTTGAGCTGTGGAATTTATCTATCAAAAAAACAGATAATGTTAGCTCAAATGCAGTTGCTTCGATGGCTATACGTCTTGATCCATTTGTGTGCCATGTTTCCTCGGTGAACCGATTGTCGTGGAGGGAACCGGAGAAGAACAAAGAGTGCAGGAAGCTCGAGCTTGCTTCCTGTGGGGCTGACCAGTGTGTTAGAGTGTTTGAGGTACAGGCTTCTGTATGA 2529 44.84 MASVGCGGGGGEVEVKAVFVGAGCNRIVNNVSWGACDLVAFGARNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKYAFRAKHLNCHFLLSGDSDGVIHLWELSLLDQKWRNVLQLPKSHKKGITCITAHVVSETVAIVASASSDGSICVWEVTFPSTYEGDCTLVLLDSLLVGSKSMVALSLAELPGNGNHLVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMHKNGEASSIMLVSSSQDRGIRIWKMALHGSLADVNGGCKKEEISLTSYIQGPIFTAGPCTYQVSLESLLIGHEDWVYSVQWQPPSAAETDGVPCYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWRNVGISSDNWKPQKVPSGHFAPVMDISWARSGDYIISVSHDQTTRIFAPWKNVNSLEGGSWHEITRPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLQNFVGTEDDLMDVQILGANMSALGLSQKPIFSHSADKTPAGGGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSYDDSMLLSVSRDRQFSVFKIQRTESDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWTVTPDSSVRQLATLSQFKSSITALSWVGLNSESSGLLAVGMESGLLELWNLSIKKTDNVSSNAVASMAIRLDPFVCHVSSVNRLSWREPEKNKECRKLELASCGADQCVRVFEVQASV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43683678 43693529 - Sed0022508.1 Sed06g1949 718492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1949 842 SUPERFAMILY WD40 repeat-like 45 448 IPR036322 GO:0005515(InterPro)
Sed06g1949 842 FunFam Elongator acetyltransferase complex subunit 2 371 683 - -
Sed06g1949 842 Gene3D - 584 686 IPR015943 GO:0005515(InterPro)
Sed06g1949 842 Pfam WD domain, G-beta repeat 690 724 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 Pfam WD domain, G-beta repeat 222 262 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 Pfam WD domain, G-beta repeat 639 675 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 Pfam WD domain, G-beta repeat 308 351 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 Pfam WD domain, G-beta repeat 410 447 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 Pfam WD domain, G-beta repeat 57 103 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 Pfam WD domain, G-beta repeat 120 153 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 Gene3D - 7 177 IPR015943 GO:0005515(InterPro)
Sed06g1949 842 Gene3D - 687 842 IPR015943 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 54 104 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 216 263 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 791 837 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 590 634 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 460 501 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 301 352 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 362 401 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 409 448 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 111 154 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 637 676 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 731 774 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 SMART WD40_4 686 725 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 PANTHER ELONGATOR COMPLEX PROTEIN 2 17 839 IPR037289 GO:0002098(InterPro)|GO:0033588(InterPro)
Sed06g1949 842 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 91 776 IPR011047 -
Sed06g1949 842 PRINTS G protein beta WD-40 repeat signature 712 726 IPR020472 -
Sed06g1949 842 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Sed06g1949 842 PRINTS G protein beta WD-40 repeat signature 141 155 IPR020472 -
Sed06g1949 842 Gene3D - 178 289 IPR015943 GO:0005515(InterPro)
Sed06g1949 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 693 734 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 693 726 - -
Sed06g1949 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 685 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515(InterPro)
Sed06g1949 842 Gene3D - 292 403 IPR015943 GO:0005515(InterPro)
Sed06g1949 842 Gene3D - 404 521 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1949 K11374 - - csv:101209018 1536.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1949 Sed-Chr6:43683678 Sed07g2116 Sed-Chr7:36700582 2.40E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30