Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1950 ATGGAGAAATCCCCTTCAATTCCACTGTTCTTCCTCCTCTGCAACTTATATCTTTCAATGGCTTCATTAAACAAAGAAGGCACTGCCCTTTTATCCTTCAAGCAATCCATCACTGAAGATCCAGAAGCTTCTCTCAGCAACTGGAATTCTTCTGATGAAACCCCATGTTCTTGGAATGGAATTACATGCAAGGATCTAAGAGTAATTTCTCTTAGCATTCCCAAGAAGAAACTCAAAGGGTTTCTTCCTTCTTCCCTAGGGTTTCTAACTGAGCTCAGACATGTGAATCTTAGGAGCAATAAACTCCATGGAACCTTGCCATTGGAGGTTTTTGAAGCTTATGGACTTCAAAGCTTGGTTCTTTATGGGAATTCCTTTTCTGGGTCTGTTCCAAATCAGATTGGTAAGCTCAAAATCCTTCAAATCTTGGATTTGTCTATGAATTTGTTTAATGGGTCGTTGCCGGTTTCGATTATGGAATGTAGGAGGTTGAGATATTTTGATGTTAGTATGAACAATTTTACTGATTCTCTGCCTGTTGGATTTGGTTCTAGTTTTAGTTTCTTGGAGAAATTGGATGTTTCTTATAATGGCTTTAATGGCTCAATTCCTATGGATTTTGGGAATTTGTCTAGCTTGCAAGGGACTGTTGATTTGTCTCATAATTTGTTTTCTGGTTCAATTCCATCTAGCTTGGGGAACCTTCCTGAAAAGGTTTATATTGATCTTACTTATAATAATTTGAGTGGTTCTATTCCTCAAAATGGTGCTCTTATGAATAGAGGACCAACTGCTTTCCTTGGGAATCCTGGCCTTTGTGGACCGCCGTTGAAGAATCCGTGTTCTTCTGAAACTTCTAATGCGAGTTCTCCGTCCTCGTTCCCGTTTTTCCCAGATAATTATCCACCGGGAGGTTCTGAGGGTAATGGTAGTAAGTATGGCAATGGAGGGATGAGTAGGAGTATGATGGTTGCGATAATCATTGGTGACATTGTCGGTATTTGCCTGATTGGGTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGTACTTGTAGAAATGGGAAGGAAGCAGACCAATCTGGCTATGGTTTTGAGAAGGGGAAGAGAAGGAGAAGAAAGGATTGTTTCTGCTTTCAAAAGGGTGAATCCGAGAATGTCGACATTGAGCAGTTTGATTTGATACCTCTGGATTCACGAGTGACGTTTGATCTCGACGAACTTCTGAAGGCATCAGCGTTTGTTTTGGGAAAAAGCAGTATCGGGATAGTGTACAAAGTTGTGCTTGAAGATGGAGTCACTTTGGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGATTTAAAGAATTTCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGACATCCAAATGTTGTTAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAACTGCTTGTTTATGATTACATACCAAATGGGAACCTTGCATTTGCCATTCATGGTAAGCTCGGAACGACATCGTTTACACCGCTACCATGGTCTGCTCGGATAAGAATCATGGAAGGTATTGCAAAAGGGTTGGCTTACTTGCACGAGTGTAGCCCCAAAAAGTATGTCCATGGCAATTTGAAGGCAAACAACATACTTCTTGGACACGACATGGTACCACATATTTCTAATTTTGGGCTCGCCCGCCTTGTTAACATCGCTGGAGGATCTCCAACCGTGCAATCGAGTCATATGGCAGAGGAAAAACCACAAGAGAAACAACCAAAGTCTGCAACCTCTGAAGAAGCTAGTGCATTCATTTCTGGTTTGAGTTCTTACTACCAAGCCCCTGAATCGTTCAAAGTCTTGAAGCCATCGCAGAAATGGGACGTATACTCGTTTGGTGTGATATTACTCGAAATGATCACCGGAAGGTTGCCAATTGTTCAGGTGGGAGCCTCGGAAATGGATCTTGTTCAATGGATTCATCTCTGCATTGAGGAGAAGAAGCCGCTTTCAGACGTGATAGATCCGTCTTTGACTCCAGACGACGATGCAGACGAGGAGATCATTGCGGTTTTGAAGATAACATTAGCTTGTGTTCAAAATAGTCCCGAAAAACGACCAGCGATGAGACACATTTCTGATGCTCTGAGCAGGATGGTTGTCACTCCCAACTGA 2154 41.92 MEKSPSIPLFFLLCNLYLSMASLNKEGTALLSFKQSITEDPEASLSNWNSSDETPCSWNGITCKDLRVISLSIPKKKLKGFLPSSLGFLTELRHVNLRSNKLHGTLPLEVFEAYGLQSLVLYGNSFSGSVPNQIGKLKILQILDLSMNLFNGSLPVSIMECRRLRYFDVSMNNFTDSLPVGFGSSFSFLEKLDVSYNGFNGSIPMDFGNLSSLQGTVDLSHNLFSGSIPSSLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFLGNPGLCGPPLKNPCSSETSNASSPSSFPFFPDNYPPGGSEGNGSKYGNGGMSRSMMVAIIIGDIVGICLIGLLFSYCYSRFCTCRNGKEADQSGYGFEKGKRRRRKDCFCFQKGESENVDIEQFDLIPLDSRVTFDLDELLKASAFVLGKSSIGIVYKVVLEDGVTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVVSLRAYYWSVDEKLLVYDYIPNGNLAFAIHGKLGTTSFTPLPWSARIRIMEGIAKGLAYLHECSPKKYVHGNLKANNILLGHDMVPHISNFGLARLVNIAGGSPTVQSSHMAEEKPQEKQPKSATSEEASAFISGLSSYYQAPESFKVLKPSQKWDVYSFGVILLEMITGRLPIVQVGASEMDLVQWIHLCIEEKKPLSDVIDPSLTPDDDADEEIIAVLKITLACVQNSPEKRPAMRHISDALSRMVVTPN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43694452 43697479 - Sed0016590.1 Sed06g1950 718493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1950 717 Gene3D Transferase(Phosphotransferase) domain 1 485 715 - -
Sed06g1950 717 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Sed06g1950 717 Gene3D Ribonuclease Inhibitor 75 285 IPR032675 -
Sed06g1950 717 Gene3D Ribonuclease Inhibitor 30 74 IPR032675 -
Sed06g1950 717 SUPERFAMILY L domain-like 25 278 - -
Sed06g1950 717 Pfam Leucine Rich Repeat 217 235 IPR001611 GO:0005515(InterPro)
Sed06g1950 717 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Sed06g1950 717 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Sed06g1950 717 Pfam Protein tyrosine and serine/threonine kinase 414 708 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g1950 717 FunFam Leucine-rich repeat family protein 25 183 - -
Sed06g1950 717 ProSiteProfiles Protein kinase domain profile. 409 713 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g1950 717 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
Sed06g1950 717 FunFam Leucine-rich repeat receptor-like protein kinase 392 484 - -
Sed06g1950 717 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 109 IPR050647 -
Sed06g1950 717 MobiDBLite consensus disorder prediction 283 309 - -
Sed06g1950 717 MobiDBLite consensus disorder prediction 570 592 - -
Sed06g1950 717 SUPERFAMILY Protein kinase-like (PK-like) 414 709 IPR011009 -
Sed06g1950 717 Gene3D Phosphorylase Kinase; domain 1 380 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1740 Sed-Chr6:42096148 Sed06g1950 Sed-Chr6:43694452 3.10E-108 dispersed
Sed06g1950 Sed-Chr6:43694452 Sed11g1647 Sed-Chr11:31758718 1.40E-196 dispersed
Sed14g0175 Sed-Chr14:2025355 Sed06g1950 Sed-Chr6:43694452 3.00E-73 transposed
Sed06g1950 Sed-Chr6:43694452 Sed07g2112 Sed-Chr7:36643734 2.20E-279 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79392 PF00069 Pkinase 3.90E-28 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1950 - - - 0.0