Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1959 ATGAGAATCTCTCCTCCGCCGCCGTCTGTTTCCTCCTGCTCTTCCTCCTCCTCCTCCTGCATCGGCGGCTCCGATTCCGCCATTAACACTGACAATGTCGACGAAAAAAACAGCAATCTCTCCGCCGCGCCTCACCGGCCGAAATCGGAGAAAACCGGAGCGAAGCGGCGGCGGAGGAATCAAGACGAATCGAAATGTGAGATTCAGAGCAACAGCAATGCCGCTTCCGGTCGCCGGAGCTCCATTTACAGAGGCGTGACTAGGCACCGATGGACCGGCCGGTTCGAGGCGCATTTATGGGACAAGAGTTCGTGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTTTATTTGGGAGCTTACGATAATGAGGAAGCTGCCGCGCGAACTTATGACCTCGCTGCCCTTAAATACTGGGGGCCCGAAACCAATCTCAATTTCCCGGCAGAGTCGTACAGGAATGAAATGGAAGAAATGCGGAAAGTAACGAAGGAAGAATATTTGGGGACGTTGCGGCGGCGGAGCAGTGGATTTTCCAGAGGCGTTTCGAAGTACCGCGGCGTTGCCCGCCACCACCACAACGGCCGCTGGGAAGCTCGGATCGGCCGCGTTTTCGGAACCAAATATCTCTACCTCGGTACTTACAACACACAAGAAGAAGCAGCTGCAGCTTATGACATGGCTGCAATTGAGTACAGAGGAGCCAATGCAGTTACAAACTTTGACATTAGCAATTACATTGGAAGATTAGAAAACAAACCATCAGTTTTAACTGAACAACAAGAAGACAATCCCAATTATTCCCCTGTTTCCTCTGAGGGAGAAGTAGTACAACAACAACAACAACCGACATTCTCGAGCCCGTCGGGCCTCCATTTCTCGTTGACGCTTCCGTTGATCGAGAACAATAACTCGGGAATGTGTGTCATGGAGGAGCCTACGCAAGGCGATCATGATCTGCATTGGTCTTTCTTAGACACGGGATTCGCTGAGGTCCCTGACCTCCCGCTTGAGAAATCGAGCGAACTAGCCGATTTGTACTTCGATGAGATTGGGTTCGACGACGACATCGGGCTGATATTCGAAGCGAGCTTAGAGAACAAGAGCATTGAGGACAATAGTAAAGAGGATAATGAGAAAATGAAATTGTTGTCAACAACTACTACTTCACCATCCTCCTCTTCAGTAACAACCACCTCAGTAATTTCTTGTTAA 1215 49.79 MRISPPPPSVSSCSSSSSSCIGGSDSAINTDNVDEKNSNLSAAPHRPKSEKTGAKRRRRNQDESKCEIQSNSNAASGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPETNLNFPAESYRNEMEEMRKVTKEEYLGTLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGTKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKPSVLTEQQEDNPNYSPVSSEGEVVQQQQQPTFSSPSGLHFSLTLPLIENNNSGMCVMEEPTQGDHDLHWSFLDTGFAEVPDLPLEKSSELADLYFDEIGFDDDIGLIFEASLENKSIEDNSKEDNEKMKLLSTTTTSPSSSSVTTTSVISC 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43759643 43765565 + Sed0014515.1 Sed06g1959 718502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1959 404 FunFam AP2-like ethylene-responsive transcription factor 81 150 - -
Sed06g1959 404 ProSiteProfiles AP2/ERF domain profile. 82 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Sed06g1959 404 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 51 281 - -
Sed06g1959 404 MobiDBLite consensus disorder prediction 258 288 - -
Sed06g1959 404 ProSiteProfiles AP2/ERF domain profile. 184 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 SMART rav1_2 82 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 SMART rav1_2 184 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 SUPERFAMILY DNA-binding domain 81 149 IPR016177 GO:0003677(InterPro)
Sed06g1959 404 FunFam AP2-like ethylene-responsive transcription factor 183 244 - -
Sed06g1959 404 CDD AP2 183 244 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 Gene3D AP2/ERF domain 183 244 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 Gene3D AP2/ERF domain 82 150 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 MobiDBLite consensus disorder prediction 66 80 - -
Sed06g1959 404 Pfam AP2 domain 183 234 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 Pfam AP2 domain 83 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 MobiDBLite consensus disorder prediction 383 404 - -
Sed06g1959 404 MobiDBLite consensus disorder prediction 1 81 - -
Sed06g1959 404 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 PRINTS Ethylene responsive element binding protein signature 224 244 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g1959 404 MobiDBLite consensus disorder prediction 1 45 - -
Sed06g1959 404 SUPERFAMILY DNA-binding domain 183 244 IPR016177 GO:0003677(InterPro)
Sed06g1959 404 CDD AP2 81 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1959 Sed-Chr6:43759643 Sed08g1351 Sed-Chr8:28090916 1.30E-71 dispersed
Sed08g0558 Sed-Chr8:3755793 Sed06g1959 Sed-Chr6:43759643 2.40E-80 transposed
Sed09g1410 Sed-Chr9:37972345 Sed06g1959 Sed-Chr6:43759643 1.20E-78 transposed
Sed06g1959 Sed-Chr6:43759643 Sed07g2157 Sed-Chr7:37124260 3.80E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38923 PF00847 AP2 1.40E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1959 - - - 0.0