Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1977 ATGGGGGTTCCTGCAACTCCGAGCGACGATTTTCTCAGAGAAAGAGCGGCTAAAATGAGAGAATCGCTGCAAAAGAGCCAAACCATTACTGATAACGTCGTTACGATTCTGGGTTCCTTCGATCATCGTCTTTCGGCTCTTGAAACGGCTATGCGCCCTACTCAGATTAGGACTCATTCTATTCGTAAAGCTCATGAGAATATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCTCAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTCAAAGGGCCACATGAGGATTTGGAGAGTTATCTTGGAGCAATTGGTCAATTAAGAAGCATTATTAAATTTTTTAGCAGCCAGAAAGGTTTTAAGAGTGGTGAGGTAGTACTTAACCAGGCTAATAATCTGCTTGCAAAAGCCATCTCAAAGCTTGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGCAAACCTGTGGAGCCTGAGCGTCTTTTTGATTGCCTGCCAAAATCATTGCAACCACCTTCAGACTCTCCTGGTCAACATGATCATTCGGGTGGAAAGAATCCCTCCTCAAATCATCATCATCATGATAATAACTTGGAGACTGCTGTCTACACACCACCCACTCTCATACCACCACGCGTTCTACCACTGTTGCACAATTTATCACAGCAGATGGTTCAAGCTGGTCATCAACAGCAAATTCTACAAGTCTACAAGGATGCCCGTTCAGCCGTTATGGAAGAAAGCTTACGGAAATTGGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTCAAACTACTGTTTGCTGGAGAACGAAAAGTGTGCGATCAAATATTTGAAGGCTTTGAATCGCTTAGAGATCAATCATTTGCAGATGTTACAAGTAGTAGTGTCTCTGTGTTATTCAGTTTTGGGGAGGCAATTGCTAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTCCTTTTGGACATGTATGAAATAATGCGAGAGCTTCACTCAGAGATTGAGACAATATTTAAGGGTAAAGCAAGCAACGAGATAAGGGAATCTGCATCGGGTTTGACCAAACGGCTTGCACAGACAGCTAAGGATACGTTTGGCGATTTTGAGGAAGCTGTTGAAAAAGATGCCACAAAAACTGCGGTTTTGGATGGAACTGTTCATCCTTTGACAAGCTATGTGATTAATTATGTCAAATTTCTTTTTGACTACCAAGCAACCTTGAAGCAGCTTTTTCAAGAATTTGAAGAAAGTGGTCAAACGAGTTCGGAATTGGCGTCTGTCACGATGCAAATAATGCAGGCTCTTCAATCTAATTTGGACGGAAAATCGAAGAATTACAGAGATCCTGCTTTGACTCACTTGTTCCTCATGAACAACATTCATTATATAGTTAGATCTGTACGCAGATCTGAAGCGAAGGATTTGCTAGGGGACGATTGGGTTCAGCGACACAGGAGGGTTGTACAACAACATGCTAATCAGTATAAAAGGACTGCTTGGGCCAAGATTCTGCAATGCCTCTCTGTTCAAGGATTAACTTCGTCTGGCGGCGGAAGTGTACCTGGTATAGATGGAGGAAACAGCAGTGGAGTTTCTAGGGCACTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCCGATACCGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAATCTTACTTCCTGCCTACAGATCCTTCCTAAAACGGTTCGGGCCACTAGTTGATGGTGTAAAGAATCCTCAGAAGTTTGTCAGATACCAACCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAGGGAAAGAACATGAACGAACCTAAGCGGTAG 1956 42.64 MGVPATPSDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTHSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILKGPHEDLESYLGAIGQLRSIIKFFSSQKGFKSGEVVLNQANNLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPPSDSPGQHDHSGGKNPSSNHHHHDNNLETAVYTPPTLIPPRVLPLLHNLSQQMVQAGHQQQILQVYKDARSAVMEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFADVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKASNEIRESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEESGQTSSELASVTMQIMQALQSNLDGKSKNYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRTAWAKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSRALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEILLPAYRSFLKRFGPLVDGVKNPQKFVRYQPEDLERMLGEFFEGKNMNEPKR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43901210 43907994 + Sed0014240.1 Sed06g1977 718520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1977 651 Pfam Exocyst complex component Exo70 N-terminal 71 153 - -
Sed06g1977 651 Pfam Exo70 exocyst complex subunit C-terminal 279 638 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed06g1977 651 MobiDBLite consensus disorder prediction 167 201 - -
Sed06g1977 651 SUPERFAMILY Cullin repeat-like 78 642 IPR016159 -
Sed06g1977 651 Gene3D Exocyst complex component Exo70 76 651 - -
Sed06g1977 651 PANTHER EXOCYST COMPLEX PROTEIN EXO70 15 644 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed06g1977 651 Coils Coil 130 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1977 Sed-Chr6:43901210 Sed14g0271 Sed-Chr14:2835407 3.20E-261 dispersed
Sed06g1977 Sed-Chr6:43901210 Sed07g2172 Sed-Chr7:37253760 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1977 K07195 - csv:101206262 1166.76