Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g1980 ATGTTTCCTTTCTTGAGAATTCTGTTTCTTAGTTTATGTTGTTCACTGCTCTTTTTTAGCTCAAAGTCACAAGATGATCATCAAAAGGTATATATTGTATACATGGGAAGTCATTCAAAAAATAAAGTCTCAACTTCCTTCCATCATATGAGAATACTACAAGAAGTCATTGGCAGCAGCTTTGCTCCAGACTCTTTACTCCATAGCTACAAGAGAAGCTTCAATGGTTTTGTTGTAAAATTGACTGAAATTGAAGCACACAAAGTTTCAAAAATGAAAGGTGTAATCTCAATTTTTCCAAATGGAAAAAACCAACTCCACACAACAAGGTCTTGGGATTTCATGGGTTTCTCCGAACAAGTCAATAGAGTTCCATCAATAGAGAGTGACATCATCGTCGGAGTACTCGACACCGGCATTTGGCCGGAATCTTCGAGTTTCAACGACAAAGGATACGGTCCGCCACCGGCTAAGTGGAAAGGCCGCTGCGAAGCCTCGGCTAATTTCACTTGCAACAATAAAATCATTGGAGCTCGATCATATCGTAGCGACGGTCGACGTCCAACAAAAGATATTGCAGGTCCGAGAGACTCAAACGGACACGGAACCCACACCGCATCGACAGTGGCAGGAGGCTTGGTGAGGAAAGCGAGCATGTTAGGTCTCGGCCTTGGCACAGCGCGGGGCGGAGTACCATCGTCCCGCATTGCCATTTACAAAGTATGCTGGTTAGACGGGTGCTTCGACGCCGACATTCTTGCTGCATTCGACGACGCCATTGCGGACGGGGTTGATATCCTCTCGATCTCTCTTGGGGGAAGAGTGGTGAAAGATTACTTCAACGACTCTATAGCCATCGGAGCTTTCCATGCAATGAAGAACGGAATCCTCACTTCGATGTCGGCCGGAAACCAGGGCCCTAGGTTTTCGACGATTAGAAACTACTCGCCGTGGTCGTTGGCGGTGGCGGCGAGCACAACTGACCGGAAATTTGTCACCAGAGTAGAGATTGGAGACGGACGAGGATTCGATGGAGTTAGTATCAATACTTTTGATTTAAAGGGATCAAAATTTCCATTGGTTTATGCTGGAGATATTCCTGCTGCTGGCTTCAACGGATCTGTGTCCAGGTTTTGCAAGAACAACACTGTGGACAAGAAACTGGTGAAGGGTAAAATTGTCATGTGTGATTTATATCAGCGTCCAACACAAATAGAAGGTGTAATTAAAGGTGCTGTTGGTGTTATAATGCAAGACAAATCTGCACAAGACATTACTTTCTCTTATCCATTGCCTGCTTCTCACCTTGGTTCACAAGATGGGGCTGACATTTTTTCTTATATCATCTCGAATCATAGCCTTTCAAGAGCAACAATATTGAAGAGCAAGGAAGGGAAACATAAAGACAGCCCTTTTATCGCAACATTTTCTTCAAGGGGTCCAAATCCAATAACCCCCAACATTCTCAAGCCCGATTTGTGTGGTCCTGGAGTTGAAATCCTAGCAGCATGGTCTCCAATGGCTTCTCCTTCAAGAACTGCAAATGATAAGAGAAAGGTTTCTTATAATATAATTTCAGGAACTTCCATGTCTTGTCCACATGCCACTGCAGCTGCGGCTTATGTTAAGTCATTTCATCCTACTTGGTCTCCTGCTGCACTCAAATCTGCACTTATGACTACTGCATTTTCAATGAGCCAAGAAATCAACCCAAGCAGAGAATTTGGATATGGGTCAGGCCACATAAACCCATTAGGAGCAATAAGCCCAGGATTAATTTACAATGCTACACAAATAGACTATATAAACTTTCTATGTGGCCAAGGTTACACCACAGAGCTACTCCAACAAGTCTCTGGTGACAACAATACTTGTTCTAATTCAAACAACTTCAACTCTGTTTTTGACCTAAACTACCCTTCCTTTACTCTTCTAATTACAAACACCTCAAATCCCATCTCCCAAATTTTCAAAAGAATTGTCACAAATGTTGGATCATCAAATTCTACATATGAAGCTTCCATTCTTAACCTTCCAAAGGGTCTTAATATTACAGTGAAGCCTAATGTTCTAAGATTCAAGGCTTTGGAAGAGGAACTAAGCTTTGAGGTTGAAATTGAAGGGAAAATTAGTTCTAATTTTGAAGCTGCTTCCTTGCTTTGGGATGATGGTCAACATCAAGTTATAAGCCCTATAGTTGTGTTTGCATATATTGTTTAG 2220 42.43 MFPFLRILFLSLCCSLLFFSSKSQDDHQKVYIVYMGSHSKNKVSTSFHHMRILQEVIGSSFAPDSLLHSYKRSFNGFVVKLTEIEAHKVSKMKGVISIFPNGKNQLHTTRSWDFMGFSEQVNRVPSIESDIIVGVLDTGIWPESSSFNDKGYGPPPAKWKGRCEASANFTCNNKIIGARSYRSDGRRPTKDIAGPRDSNGHGTHTASTVAGGLVRKASMLGLGLGTARGGVPSSRIAIYKVCWLDGCFDADILAAFDDAIADGVDILSISLGGRVVKDYFNDSIAIGAFHAMKNGILTSMSAGNQGPRFSTIRNYSPWSLAVAASTTDRKFVTRVEIGDGRGFDGVSINTFDLKGSKFPLVYAGDIPAAGFNGSVSRFCKNNTVDKKLVKGKIVMCDLYQRPTQIEGVIKGAVGVIMQDKSAQDITFSYPLPASHLGSQDGADIFSYIISNHSLSRATILKSKEGKHKDSPFIATFSSRGPNPITPNILKPDLCGPGVEILAAWSPMASPSRTANDKRKVSYNIISGTSMSCPHATAAAAYVKSFHPTWSPAALKSALMTTAFSMSQEINPSREFGYGSGHINPLGAISPGLIYNATQIDYINFLCGQGYTTELLQQVSGDNNTCSNSNNFNSVFDLNYPSFTLLITNTSNPISQIFKRIVTNVGSSNSTYEASILNLPKGLNITVKPNVLRFKALEEELSFEVEIEGKISSNFEAASLLWDDGQHQVISPIVVFAYIV 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43922152 43929262 - Sed0007376.1 Sed06g1980 718523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g1980 739 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 107 IPR037045 -
Sed06g1980 739 FunFam Subtilisin-like protease SBT5.3 19 107 - -
Sed06g1980 739 Pfam Subtilase family 129 578 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed06g1980 739 SUPERFAMILY Subtilisin-like 106 592 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed06g1980 739 CDD PA_subtilisin_like 335 459 - -
Sed06g1980 739 ProSitePatterns Serine proteases, subtilase family, serine active site. 527 537 IPR023828 -
Sed06g1980 739 Pfam Peptidase inhibitor I9 30 107 IPR010259 -
Sed06g1980 739 Gene3D - 605 736 - -
Sed06g1980 739 CDD Peptidases_S8_3 105 562 IPR034197 -
Sed06g1980 739 FunFam Subtilisin-like protease SBT1.5 130 369 - -
Sed06g1980 739 Gene3D Peptidase S8/S53 domain 130 601 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed06g1980 739 ProSiteProfiles Serine proteases, subtilase domain profile. 111 588 - -
Sed06g1980 739 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 732 IPR045051 -
Sed06g1980 739 Gene3D - 328 466 - -
Sed06g1980 739 Pfam Fibronectin type-III domain 636 734 IPR041469 -
Sed06g1980 739 PRINTS Subtilisin serine protease family (S8) signature 128 147 IPR015500 -
Sed06g1980 739 PRINTS Subtilisin serine protease family (S8) signature 526 542 IPR015500 -
Sed06g1980 739 PRINTS Subtilisin serine protease family (S8) signature 197 210 IPR015500 -
Sed06g1980 739 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3262 Sed-Chr1:60756432 Sed06g1980 Sed-Chr6:43922152 1.20E-166 dispersed
Sed06g1980 Sed-Chr6:43922152 Sed07g2519 Sed-Chr7:40875414 1.30E-255 dispersed
Sed06g1980 Sed-Chr6:43922152 Sed09g0258 Sed-Chr9:2064825 6.40E-306 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g1980 - - - 0.0