Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2004 ATGTTGGCAATGGAGGAGGATTTTGACGCCAAGTTGATGATTCAGAATCAGAGCAACGCTTCTAATGGCGGCAATGTTCAAAGATCCAAGAGCTTTGCGTTTAGGGCTCCTCAAGAGAATTTTACTGTCCAGGATTTTGTATTGGGAAAAATATATGGCGTTGGTTCATATTCCAAGGTTGTGAGGGCAAAGAAGAAGGATACAGGAATGGTGTATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCATATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTATATGGCATTGGAATCCTGTGAAGGCGGGGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTATCAGAGGATGAAGCTCGGTTTTACGCTGCAGAAGTCGTCGATGCTCTTGAATACATACACAACATGGGATTGATTCACCGAGATATCAAGCCTGAGAACTTGCTGCTTACTACTGACGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTCGATAGTCAAATTACCGTGCTTCCAAATGCTGCAGCATCAGATGATAAAGCTTGTACATTTGTGGGCACTGCCGCATATGTTCCTCCAGAAGTTCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCGCTCGGGTGCACAGTGTACCAGATGCTATCAGGGACTTCGCCTTTTAAAGATGCAAGCGAATGGCTTATTTTTCAAAAAATTGTAGCGCGAGATATAAAATTTCCCAGCTATTTTTCAGAGCAAGCTAGGGATCTTATTGACCACCTATTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCTGAGGGTTATGCTTCTCTCAAGAGTCATCCCTTCTTTGAGGGGATTGATTGGATGAACATAAGAGCACAAACCCCTCCCAGCCTTGCTTTGGAAGCAGTGTCTCATTCAAACGCGAACGACAATAGCTCCGAGTCCTCTTGGAATCCTTCACATATTGGAGATGGTGCACCAAGACAAAATGATGGGAATGCTGGTTCTGCGTCAACTTCTGATGGGTCACATAATGTCACTCGGCTTGCATCGATAGACTCCTTCGATTCGAAATGGCAGCAATTCCTTGAACCTGGAGAATCTGTTCTTATGATTTCAATGGTGAAGAAACTTCAGAAAATAACAAGCAAAAAGGTGCAGCTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCGAAGCTCATTGTCAAGGGGAGTATCATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCAAAAAAGATTGCTTCTTTTGAGGACGCTAAACAGCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1479 42.93 MLAMEEDFDAKLMIQNQSNASNGGNVQRSKSFAFRAPQENFTVQDFVLGKIYGVGSYSKVVRAKKKDTGMVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSQITVLPNAAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYASLKSHPFFEGIDWMNIRAQTPPSLALEAVSHSNANDNSSESSWNPSHIGDGAPRQNDGNAGSASTSDGSHNVTRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKITSKKVQLILTNKPKLIYVDPSKLIVKGSIIWSDNPNDLNIQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44140505 44148294 - Sed0002916.1 Sed06g2004 718547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2004 492 MobiDBLite consensus disorder prediction 335 355 - -
Sed06g2004 492 Pfam Protein kinase domain 49 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2004 492 FunFam 3-phosphoinositide-dependent protein kinase 2-like 130 329 - -
Sed06g2004 492 FunFam 3-phosphoinositide-dependent protein kinase 1 362 492 - -
Sed06g2004 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2004 492 MobiDBLite consensus disorder prediction 335 375 - -
Sed06g2004 492 FunFam 3-phosphoinositide-dependent protein kinase 2-like 44 129 - -
Sed06g2004 492 Pfam PH domain 389 491 IPR033931 -
Sed06g2004 492 SUPERFAMILY Protein kinase-like (PK-like) 43 382 IPR011009 -
Sed06g2004 492 ProSiteProfiles Protein kinase domain profile. 46 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2004 492 SUPERFAMILY PH domain-like 308 491 - -
Sed06g2004 492 Gene3D Phosphorylase Kinase; domain 1 44 129 - -
Sed06g2004 492 SMART serkin_6 46 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2004 492 Gene3D - 360 492 IPR011993 -
Sed06g2004 492 Gene3D Transferase(Phosphotransferase) domain 1 130 326 - -
Sed06g2004 492 Coils Coil 472 492 - -
Sed06g2004 492 CDD STKc_PDK1 44 314 IPR039046 GO:0004674(InterPro)
Sed06g2004 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 329 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2004 Sed-Chr6:44140505 Sed07g2219 Sed-Chr7:38058642 2.70E-183 dispersed
Sed06g2004 Sed-Chr6:44140505 Sed06g2005 Sed-Chr6:44140505 2.80E-273 tandem
Sed06g2004 Sed-Chr6:44140505 Sed07g2218 Sed-Chr7:38058642 5.10E-259 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79395 PF00069 Pkinase 1.30E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2004 K06276 - csv:101212874 907.516