Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2006 ATGAATTGCCTTCGAAACCTTTCAATATCATCTTCTTTGCCGCTTCGAAGCTTCAAATGCCGTCGAGGAAATCCTGATTTCCGCCTCTGCAAACTGGTGGTAAGGAACTTCACCGATCTACACCGACGTTCTTCAGTAAAGGCAGTATCTGGCTCTTCATCAAGTGCCAAAATCAGTGGCGCCGAAGTCGATAATGCTGCGGCAAAGGACAAAGAGGAGGAGGAGGAGGAGGAAAAGTCTGAGATATATAGCCACAACATGACAGAAGCTATGGGTGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTCGACAAGCTCCGCAGCATTGGAGTAAAAACAATTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCGTATACAAAGACGTTTGATGACATTGAACATTTGCGAGCTCAAATAAGGGATTTTGATGCATTCGACCTACGGCTAAGATTACCTGCTGTCGTAAGCGAATTACATAAAGCCATAAACCGAAATGGTGGAGTGGCTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGATGGCTTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTTTAGAATTACTGCTGAGTAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAATGCAACGGCTGATATTCTTTCAGGATTTAACAAGAAACCTATCACTTTATCGTGGGAAGATGACCGATGCTCAACTGTAGAGGTATCTGGACTTGATATTGGATGGGGCCAGAGAATGCCATTAAAATTTGACAAAGAGCGAGGCGCATGGATTCTCAATAGGGAACTGGCGGAAGGACGATATGAATACAAGTATATTATTGATGGCGTATGGATGTGCAACGGAAACGCACCCGTCACTACACCCAACAAAGATGGCCACGTCAACAATTTCATAGAAGTTGATGACAATGATCCAAGCAGTGAGAGAGCAATTCTTCGGGGAAGATTAACAGGAGATGACCCAGAACTAACGGGCGAAGAAAGAAGCAAAATAAGACAATTTCTTGAAGCTTGCCCAGAGGAAAATTGA 1161 43.24 MNCLRNLSISSSLPLRSFKCRRGNPDFRLCKLVVRNFTDLHRRSSVKAVSGSSSSAKISGAEVDNAAAKDKEEEEEEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSELHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKNATADILSGFNKKPITLSWEDDRCSTVEVSGLDIGWGQRMPLKFDKERGAWILNRELAEGRYEYKYIIDGVWMCNGNAPVTTPNKDGHVNNFIEVDDNDPSSERAILRGRLTGDDPELTGEERSKIRQFLEACPEEN 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44156099 44164463 + Sed0001799.1 Sed06g2006 718549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2006 386 Coils Coil 58 78 - -
Sed06g2006 386 SUPERFAMILY E set domains 261 346 IPR014756 -
Sed06g2006 386 CDD E_set_AMPKbeta_like_N 263 344 - -
Sed06g2006 386 Gene3D Immunoglobulins 259 350 IPR013783 -
Sed06g2006 386 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 181 239 IPR000387 GO:0016311(InterPro)
Sed06g2006 386 Pfam Glycogen recognition site of AMP-activated protein kinase 263 348 IPR032640 -
Sed06g2006 386 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 259 349 - -
Sed06g2006 386 Pfam Dual specificity phosphatase, catalytic domain 160 242 IPR000340 GO:0016311(InterPro)
Sed06g2006 386 SMART dsp_5 104 250 IPR020422 GO:0006470(InterPro)
Sed06g2006 386 CDD DSP_laforin-like 103 250 IPR045204 GO:0019203(InterPro)
Sed06g2006 386 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 97 277 - -
Sed06g2006 386 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 101 245 IPR029021 -
Sed06g2006 386 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 385 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Sed06g2006 386 Gene3D Protein tyrosine phosphatase superfamily 97 378 IPR029021 -
Sed06g2006 386 MobiDBLite consensus disorder prediction 60 81 - -
Sed06g2006 386 ProSiteProfiles Dual specificity protein phosphatase domain profile. 104 261 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0547 Sed-Chr6:4800107 Sed06g2006 Sed-Chr6:44156099 1.40E-29 dispersed
Sed06g0548 Sed-Chr6:4800107 Sed06g2006 Sed-Chr6:44156099 1.10E-29 dispersed
Sed06g2006 Sed-Chr6:44156099 Sed07g2222 Sed-Chr7:38100102 6.30E-188 dispersed
Sed06g2006 Sed-Chr6:44156099 Sed07g2221 Sed-Chr7:38100102 6.30E-188 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2006 - - - 0.0