Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2006 | ATGAATTGCCTTCGAAACCTTTCAATATCATCTTCTTTGCCGCTTCGAAGCTTCAAATGCCGTCGAGGAAATCCTGATTTCCGCCTCTGCAAACTGGTGGTAAGGAACTTCACCGATCTACACCGACGTTCTTCAGTAAAGGCAGTATCTGGCTCTTCATCAAGTGCCAAAATCAGTGGCGCCGAAGTCGATAATGCTGCGGCAAAGGACAAAGAGGAGGAGGAGGAGGAGGAAAAGTCTGAGATATATAGCCACAACATGACAGAAGCTATGGGTGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTCGACAAGCTCCGCAGCATTGGAGTAAAAACAATTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCGTATACAAAGACGTTTGATGACATTGAACATTTGCGAGCTCAAATAAGGGATTTTGATGCATTCGACCTACGGCTAAGATTACCTGCTGTCGTAAGCGAATTACATAAAGCCATAAACCGAAATGGTGGAGTGGCTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGATGGCTTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTTTAGAATTACTGCTGAGTAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAATGCAACGGCTGATATTCTTTCAGGATTTAACAAGAAACCTATCACTTTATCGTGGGAAGATGACCGATGCTCAACTGTAGAGGTATCTGGACTTGATATTGGATGGGGCCAGAGAATGCCATTAAAATTTGACAAAGAGCGAGGCGCATGGATTCTCAATAGGGAACTGGCGGAAGGACGATATGAATACAAGTATATTATTGATGGCGTATGGATGTGCAACGGAAACGCACCCGTCACTACACCCAACAAAGATGGCCACGTCAACAATTTCATAGAAGTTGATGACAATGATCCAAGCAGTGAGAGAGCAATTCTTCGGGGAAGATTAACAGGAGATGACCCAGAACTAACGGGCGAAGAAAGAAGCAAAATAAGACAATTTCTTGAAGCTTGCCCAGAGGAAAATTGA | 1161 | 43.24 | MNCLRNLSISSSLPLRSFKCRRGNPDFRLCKLVVRNFTDLHRRSSVKAVSGSSSSAKISGAEVDNAAAKDKEEEEEEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSELHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKNATADILSGFNKKPITLSWEDDRCSTVEVSGLDIGWGQRMPLKFDKERGAWILNRELAEGRYEYKYIIDGVWMCNGNAPVTTPNKDGHVNNFIEVDDNDPSSERAILRGRLTGDDPELTGEERSKIRQFLEACPEEN | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44156099 | 44164463 | + | Sed0001799.1 | Sed06g2006 | 718549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2006 | 386 | Coils | Coil | 58 | 78 | - | - | |
Sed06g2006 | 386 | SUPERFAMILY | E set domains | 261 | 346 | IPR014756 | - | |
Sed06g2006 | 386 | CDD | E_set_AMPKbeta_like_N | 263 | 344 | - | - | |
Sed06g2006 | 386 | Gene3D | Immunoglobulins | 259 | 350 | IPR013783 | - | |
Sed06g2006 | 386 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 181 | 239 | IPR000387 | GO:0016311(InterPro) | |
Sed06g2006 | 386 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 263 | 348 | IPR032640 | - | |
Sed06g2006 | 386 | FunFam | Phosphoglucan phosphatase DSP4, chloroplastic | 259 | 349 | - | - | |
Sed06g2006 | 386 | Pfam | Dual specificity phosphatase, catalytic domain | 160 | 242 | IPR000340 | GO:0016311(InterPro) | |
Sed06g2006 | 386 | SMART | dsp_5 | 104 | 250 | IPR020422 | GO:0006470(InterPro) | |
Sed06g2006 | 386 | CDD | DSP_laforin-like | 103 | 250 | IPR045204 | GO:0019203(InterPro) | |
Sed06g2006 | 386 | FunFam | Phosphoglucan phosphatase DSP4, chloroplastic | 97 | 277 | - | - | |
Sed06g2006 | 386 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 101 | 245 | IPR029021 | - | |
Sed06g2006 | 386 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 3 | 385 | IPR052832 | GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER) | |
Sed06g2006 | 386 | Gene3D | Protein tyrosine phosphatase superfamily | 97 | 378 | IPR029021 | - | |
Sed06g2006 | 386 | MobiDBLite | consensus disorder prediction | 60 | 81 | - | - | |
Sed06g2006 | 386 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 104 | 261 | IPR020422 | GO:0006470(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0547 | Sed-Chr6:4800107 | Sed06g2006 | Sed-Chr6:44156099 | 1.40E-29 | dispersed | |
Sed06g0548 | Sed-Chr6:4800107 | Sed06g2006 | Sed-Chr6:44156099 | 1.10E-29 | dispersed | |
Sed06g2006 | Sed-Chr6:44156099 | Sed07g2222 | Sed-Chr7:38100102 | 6.30E-188 | dispersed | |
Sed06g2006 | Sed-Chr6:44156099 | Sed07g2221 | Sed-Chr7:38100102 | 6.30E-188 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2006 | - | - | - | 0.0 |