Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2015 ATGGGTTCATCGTCGGAGCTGGCGAGTCAACTGGGTGAATCTGTGAGGGAGATTTGTGGGCTTTCTGAGTGTAACGGAATCTGTAAGAAGATGTATGGGGATTTGATTCGAAGGATTAAGTTATTAAGTCCTTTGTTTGAGGAATTGAGAGATGGAGATGAAGAACTTGGATTGGATGTTGTTAAGGGCTTGGAATTGCTTAAGGTTGCTTTGGATTCTGCTGTTGAGCTTCTTAGGTCGGTCAGCCGTGGTAGCAAGCTGTTTCAGGCTTCGCAGTTGGAGAAGATATTACTTGAGTTTCATCAAATGACAGAAGATATTGAATCAGCACTCAGCAAGCTTCCCATCGACAAGCTCGGGATCTCTGATGAGGTTCAAGAACAGACCGAACTTGTTCATGCTCAATTCAAACGAGCGAAAGAGAGAGTAGGTTCAGCTGATGCTCAGTTAGACAAGGATTTAGCCATATTAGAGGAAGAAATGGATCCTGACCCTGCAATATTGAAAAGAGTTTCTGAAAAGCTGCATCTTTGGACTATAAACGATATCAAGAAAGAGTCGGTAGCAATCCACGAGCTGGTGATCTCGATAGATGGAGGAGACCCAGGGGAAGTTTTCGTAAAAATGTCATCCATTTTAAAGAAGCTGAATGATTTTGTACAATCAGAAAATCCAGAAGTTGAAACTTCTCTAGATGAAAAAAGTACAACCATTAAACACAGATCTCCTGTCATCCCAGACGATTTCCGGTGCCCCATATCTCTTGAATTGATGAGGGATCCCGTCATCGTCTCCACTGGGCAGACTTATGAGAGATCTTGCATTCAGAGATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAAAGTTTGATTTCTTTGTGGTGTGAAAACAATGGCGTTGAACTGCCAAGGCAGCAAGGTGGCTGCAGAAGCAGAAGACCCGGAAGCAGCATTTCAGACTGCGATCGGGCTGCCATCGACACCTTACTGCTAAAGCTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTTCGATTACTAGCAAAGAGGAATTCAGATAACAGAATTTGCATCGCCGAAGCAGGAGCCATTCCATTCCTTGTCGAACTATTATCCTCAAATGATACAAGAACCCAAGAGCATGCAGTTACTGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATCGTCGATCTACGAGCCATACCCGCAATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATTGATGAGAACAAGGTCGCGATAGGAGCAGCCGGGGCAATTCCGGCTCTCATAAGCTTGCTTTGTGAAGGTACACCCAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAAGGGAACAAAGCTAGGGCTGTAAGAGCAGGCATTGTGACTCCACTTATAGGATTTCTAAAAGATGCTGGAGGTGGAATGGTGGATGAAGCTCTAGCCATTTTGGCCATTCTTGCATCTCACCATGAAGGAAAGATGGCAATAGGGCAAGCTGAGCCGATGGCAGTTCTATTGGAGTTTATCAGAACCGGTTCTCCACGAAACCGGGAGAACGCTGCTGCTGTGCTTTGGTCGCTTTGCAGTACAGATGTCGAGCAGTTGAAGTTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAAGAAGTATCTGAGAATGGCACAGATAGAGCAAAGAGGAAAGCGGGAAGCATTCTCGAGCTCTTTCAACGCTTCGATTCGCCATCTGCTAATCTATAG 1881 44.71 MGSSSELASQLGESVREICGLSECNGICKKMYGDLIRRIKLLSPLFEELRDGDEELGLDVVKGLELLKVALDSAVELLRSVSRGSKLFQASQLEKILLEFHQMTEDIESALSKLPIDKLGISDEVQEQTELVHAQFKRAKERVGSADAQLDKDLAILEEEMDPDPAILKRVSEKLHLWTINDIKKESVAIHELVISIDGGDPGEVFVKMSSILKKLNDFVQSENPEVETSLDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQRWLDAGHKTCPKTQQALLHTALTPNYVLKSLISLWCENNGVELPRQQGGCRSRRPGSSISDCDRAAIDTLLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVTPLIGFLKDAGGGMVDEALAILAILASHHEGKMAIGQAEPMAVLLEFIRTGSPRNRENAAAVLWSLCSTDVEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDSPSANL 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44267168 44270458 + Sed0007764.1 Sed06g2015 718558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2015 626 CDD RING-Ubox_PUB 246 298 IPR045210 -
Sed06g2015 626 Pfam U-box domain 245 315 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g2015 626 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
Sed06g2015 626 FunFam RING-type E3 ubiquitin transferase 329 621 - -
Sed06g2015 626 ProSiteProfiles U-box domain profile. 244 318 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g2015 626 FunFam RING-type E3 ubiquitin transferase 4 117 - -
Sed06g2015 626 Gene3D - 338 417 IPR011989 -
Sed06g2015 626 Gene3D - 521 625 IPR011989 -
Sed06g2015 626 SUPERFAMILY RING/U-box 242 320 - -
Sed06g2015 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 318 IPR013083 -
Sed06g2015 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 383 425 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 FunFam RING-type E3 ubiquitin transferase 245 318 - -
Sed06g2015 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 SMART arm_5 495 535 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 SMART arm_5 454 494 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 SMART arm_5 372 412 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 SMART arm_5 413 453 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 SMART arm_5 536 576 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 Gene3D - 418 520 IPR011989 -
Sed06g2015 626 PANTHER U BOX DOMAIN-CONTAINING 29 618 - -
Sed06g2015 626 Pfam Armadillo/beta-catenin-like repeat 413 452 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 Pfam Armadillo/beta-catenin-like repeat 372 411 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 Pfam Armadillo/beta-catenin-like repeat 455 493 IPR000225 GO:0005515(InterPro)
Sed06g2015 626 SMART Ubox_2 248 311 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g2015 626 SUPERFAMILY ARM repeat 342 616 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2015 Sed-Chr6:44267168 Sed13g1382 Sed-Chr13:19282203 8.80E-115 dispersed
Sed14g0889 Sed-Chr14:17752882 Sed06g2015 Sed-Chr6:44267168 4.60E-11 dispersed
Sed14g0890 Sed-Chr14:17753205 Sed06g2015 Sed-Chr6:44267168 4.60E-11 dispersed
Sed14g1301 Sed-Chr14:21924309 Sed06g2015 Sed-Chr6:44267168 4.90E-14 dispersed
Sed06g2015 Sed-Chr6:44267168 Sed05g2955 Sed-Chr5:40327452 2.30E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2015 K27628 - csv:101221065 1048.88