Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2015 | ATGGGTTCATCGTCGGAGCTGGCGAGTCAACTGGGTGAATCTGTGAGGGAGATTTGTGGGCTTTCTGAGTGTAACGGAATCTGTAAGAAGATGTATGGGGATTTGATTCGAAGGATTAAGTTATTAAGTCCTTTGTTTGAGGAATTGAGAGATGGAGATGAAGAACTTGGATTGGATGTTGTTAAGGGCTTGGAATTGCTTAAGGTTGCTTTGGATTCTGCTGTTGAGCTTCTTAGGTCGGTCAGCCGTGGTAGCAAGCTGTTTCAGGCTTCGCAGTTGGAGAAGATATTACTTGAGTTTCATCAAATGACAGAAGATATTGAATCAGCACTCAGCAAGCTTCCCATCGACAAGCTCGGGATCTCTGATGAGGTTCAAGAACAGACCGAACTTGTTCATGCTCAATTCAAACGAGCGAAAGAGAGAGTAGGTTCAGCTGATGCTCAGTTAGACAAGGATTTAGCCATATTAGAGGAAGAAATGGATCCTGACCCTGCAATATTGAAAAGAGTTTCTGAAAAGCTGCATCTTTGGACTATAAACGATATCAAGAAAGAGTCGGTAGCAATCCACGAGCTGGTGATCTCGATAGATGGAGGAGACCCAGGGGAAGTTTTCGTAAAAATGTCATCCATTTTAAAGAAGCTGAATGATTTTGTACAATCAGAAAATCCAGAAGTTGAAACTTCTCTAGATGAAAAAAGTACAACCATTAAACACAGATCTCCTGTCATCCCAGACGATTTCCGGTGCCCCATATCTCTTGAATTGATGAGGGATCCCGTCATCGTCTCCACTGGGCAGACTTATGAGAGATCTTGCATTCAGAGATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAAAGTTTGATTTCTTTGTGGTGTGAAAACAATGGCGTTGAACTGCCAAGGCAGCAAGGTGGCTGCAGAAGCAGAAGACCCGGAAGCAGCATTTCAGACTGCGATCGGGCTGCCATCGACACCTTACTGCTAAAGCTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTTCGATTACTAGCAAAGAGGAATTCAGATAACAGAATTTGCATCGCCGAAGCAGGAGCCATTCCATTCCTTGTCGAACTATTATCCTCAAATGATACAAGAACCCAAGAGCATGCAGTTACTGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATCGTCGATCTACGAGCCATACCCGCAATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATTGATGAGAACAAGGTCGCGATAGGAGCAGCCGGGGCAATTCCGGCTCTCATAAGCTTGCTTTGTGAAGGTACACCCAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAAGGGAACAAAGCTAGGGCTGTAAGAGCAGGCATTGTGACTCCACTTATAGGATTTCTAAAAGATGCTGGAGGTGGAATGGTGGATGAAGCTCTAGCCATTTTGGCCATTCTTGCATCTCACCATGAAGGAAAGATGGCAATAGGGCAAGCTGAGCCGATGGCAGTTCTATTGGAGTTTATCAGAACCGGTTCTCCACGAAACCGGGAGAACGCTGCTGCTGTGCTTTGGTCGCTTTGCAGTACAGATGTCGAGCAGTTGAAGTTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAAGAAGTATCTGAGAATGGCACAGATAGAGCAAAGAGGAAAGCGGGAAGCATTCTCGAGCTCTTTCAACGCTTCGATTCGCCATCTGCTAATCTATAG | 1881 | 44.71 | MGSSSELASQLGESVREICGLSECNGICKKMYGDLIRRIKLLSPLFEELRDGDEELGLDVVKGLELLKVALDSAVELLRSVSRGSKLFQASQLEKILLEFHQMTEDIESALSKLPIDKLGISDEVQEQTELVHAQFKRAKERVGSADAQLDKDLAILEEEMDPDPAILKRVSEKLHLWTINDIKKESVAIHELVISIDGGDPGEVFVKMSSILKKLNDFVQSENPEVETSLDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQRWLDAGHKTCPKTQQALLHTALTPNYVLKSLISLWCENNGVELPRQQGGCRSRRPGSSISDCDRAAIDTLLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVTPLIGFLKDAGGGMVDEALAILAILASHHEGKMAIGQAEPMAVLLEFIRTGSPRNRENAAAVLWSLCSTDVEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDSPSANL | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44267168 | 44270458 | + | Sed0007764.1 | Sed06g2015 | 718558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2015 | 626 | CDD | RING-Ubox_PUB | 246 | 298 | IPR045210 | - | |
Sed06g2015 | 626 | Pfam | U-box domain | 245 | 315 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed06g2015 | 626 | Gene3D | - | 7 | 117 | IPR036537 | GO:0007166(InterPro) | |
Sed06g2015 | 626 | FunFam | RING-type E3 ubiquitin transferase | 329 | 621 | - | - | |
Sed06g2015 | 626 | ProSiteProfiles | U-box domain profile. | 244 | 318 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed06g2015 | 626 | FunFam | RING-type E3 ubiquitin transferase | 4 | 117 | - | - | |
Sed06g2015 | 626 | Gene3D | - | 338 | 417 | IPR011989 | - | |
Sed06g2015 | 626 | Gene3D | - | 521 | 625 | IPR011989 | - | |
Sed06g2015 | 626 | SUPERFAMILY | RING/U-box | 242 | 320 | - | - | |
Sed06g2015 | 626 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 245 | 318 | IPR013083 | - | |
Sed06g2015 | 626 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 383 | 425 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | FunFam | RING-type E3 ubiquitin transferase | 245 | 318 | - | - | |
Sed06g2015 | 626 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 424 | 466 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | SMART | arm_5 | 495 | 535 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | SMART | arm_5 | 454 | 494 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | SMART | arm_5 | 372 | 412 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | SMART | arm_5 | 413 | 453 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | SMART | arm_5 | 536 | 576 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | Gene3D | - | 418 | 520 | IPR011989 | - | |
Sed06g2015 | 626 | PANTHER | U BOX DOMAIN-CONTAINING | 29 | 618 | - | - | |
Sed06g2015 | 626 | Pfam | Armadillo/beta-catenin-like repeat | 413 | 452 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | Pfam | Armadillo/beta-catenin-like repeat | 372 | 411 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | Pfam | Armadillo/beta-catenin-like repeat | 455 | 493 | IPR000225 | GO:0005515(InterPro) | |
Sed06g2015 | 626 | SMART | Ubox_2 | 248 | 311 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed06g2015 | 626 | SUPERFAMILY | ARM repeat | 342 | 616 | IPR016024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2015 | Sed-Chr6:44267168 | Sed13g1382 | Sed-Chr13:19282203 | 8.80E-115 | dispersed | |
Sed14g0889 | Sed-Chr14:17752882 | Sed06g2015 | Sed-Chr6:44267168 | 4.60E-11 | dispersed | |
Sed14g0890 | Sed-Chr14:17753205 | Sed06g2015 | Sed-Chr6:44267168 | 4.60E-11 | dispersed | |
Sed14g1301 | Sed-Chr14:21924309 | Sed06g2015 | Sed-Chr6:44267168 | 4.90E-14 | dispersed | |
Sed06g2015 | Sed-Chr6:44267168 | Sed05g2955 | Sed-Chr5:40327452 | 2.30E-123 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2015 | K27628 | - | csv:101221065 | 1048.88 |