Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2020 ATGGCCGGCGGCGGAGGAGGAATGGCCGGAATCGCCGTCCAAGCCATCACGGGGCGGTGGTTCGTCATATTCGCTTCGCTTCTAATCATGGCGGCGGCCGGCGCCACCTACATGTTCGGCCTTTACTCCGGCGACATAAAGTCCGTTTTGGGGTACGACCAAACGACGTTGAATTTGTTGAGCTTTTTCAAAGATTTGGGAGCGAACGTCGGCGTTTTGTCCGGCCTTATAAACGAAGTAACGCCGCCGTGGGTGGTGCTTTCCATCGGCGCCGTCCTTAATTTCTTCGGCTATTTCATGATTTGGCTCGCCGTCACTCGCCGGATCTCCGCCCCTAAAGTCTGGCAAATGTGTCTCTATATTTGCGTTGGTGCCAACTCTCAATCCTTTGCTAACACTGGCTCGCTTGTCACTTGTGTCAAGAACTTCCCCGAGAGCCGCGGCGTCGTCCTCGGTATCTTAAAGGGGTACGTCGGGCTAAGCGGAGCCATAATCACACAACTCTTCCATGCGTTCTACGGCTCCGACACCAAATCCTTAATCCTTCTCATCGGATGGCTCCCGGCGGCGATATCCTTCGCATTCCTACGAACCATCCGAATCATGAAAGTAATCCGACAGCCAAACGAGCTCCAAGTGTTCTACAACTTCCTCTACATCTCCCTCGCCCTCGCCGGATTCCTCATGCTCATGATCATCATACAAGCCAAACTCACATTCAATCACACCGCGTACGGCGGTAGCGCAGCCGTCGTCCTCCTCCTCCTCTTCCTCCCCCTCGCCGTCGTCGTCGTCGAAGAATACAATCTTTGGAAACTCAAATCCGCCGCCGTTAACTCCCCAAATTCAATCCAAATAGTCTCTCAAAAACCAAAAACAGAGCAATCACAAAAACAGAGCATACAACCAAAACAGAGCACACAACAAAAACAGAGCAACCCCTCTTGCTGGACCACGATCTTCAGCCCGCCCGAGCGCGGCGAGGATTTCACCATCCTCCAAGCTCTGTTCAGCATTGACATGCTGGTGCTGTTCTGCGCCGCAATTTGCGGCGTCGGCGGCACGCTGACGGCGATCGATAATCTCGGTCAGATAGGATCCTCATTGGGGTATCCAAAAAAAAGCATAAGCACATTTGTTTCGCTCGTTAGCATATGGAATTACCTCGGCCGAGTCACCTCCGGTTTCGTCTCCGAAATTGTGCTAACCAAATACAAATTCCCCCGTCCATTGATGCTATCTCTAACCCTTCTCCTGTCCTGCGTCGGCCATTTGATGATCGCTTTCGATGTCCCGAACGGGCTCTACGTCGCCTCGATCGTGATCGGGTTCTGCTTTGGCGCGCAGTGGCCGCTGCTATTCGCGATCATTTCGGAGCTTTTTGGTTTGAAATATTACTCGACGCTTTACAATTTCGGATCAGTGGCAAGTCCAATTGGGCTTTATGTGCTGAATGTGAAAATTGCTGGGAATTTCTACGACAAAGAGGCTTTGAAGCAGCTGGCAGCGAAAGGGCTGACCAGAAAAACAGGGCAAGAGCTTAAATGCATCGGTGGGGAATGTTTTAAGCTTTCATTTCTTGTAATTACGGGCGTTACTCTTTTGGGTATGTTGATTTCGTTGATTTTAGTGATTAGAACCAGGAAATTTTATAAGGGGGATATTTATCAGAGGTTTAGAGATGAAGCTGAAACAGAGTTGGCCGGAAATGTCGCCGGAGTTGCCGCCGGAGGAGCTGAGAAACAGACAAGGATGGGTTTTGGTAGGAAAGAAAAACAGGGGACAAGTTGA 1791 50.75 MAGGGGGMAGIAVQAITGRWFVIFASLLIMAAAGATYMFGLYSGDIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLAVTRRISAPKVWQMCLYICVGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGSDTKSLILLIGWLPAAISFAFLRTIRIMKVIRQPNELQVFYNFLYISLALAGFLMLMIIIQAKLTFNHTAYGGSAAVVLLLLFLPLAVVVVEEYNLWKLKSAAVNSPNSIQIVSQKPKTEQSQKQSIQPKQSTQQKQSNPSCWTTIFSPPERGEDFTILQALFSIDMLVLFCAAICGVGGTLTAIDNLGQIGSSLGYPKKSISTFVSLVSIWNYLGRVTSGFVSEIVLTKYKFPRPLMLSLTLLLSCVGHLMIAFDVPNGLYVASIVIGFCFGAQWPLLFAIISELFGLKYYSTLYNFGSVASPIGLYVLNVKIAGNFYDKEALKQLAAKGLTRKTGQELKCIGGECFKLSFLVITGVTLLGMLISLILVIRTRKFYKGDIYQRFRDEAETELAGNVAGVAAGGAEKQTRMGFGRKEKQGTS 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44310356 44313477 + Sed0015936.1 Sed06g2020 718563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2020 596 CDD MFS_Mch1p_like 18 537 - -
Sed06g2020 596 FunFam Nodulin family protein 332 553 - -
Sed06g2020 596 MobiDBLite consensus disorder prediction 289 315 - -
Sed06g2020 596 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 18 559 - GO:0016020(PANTHER)
Sed06g2020 596 Pfam Nodulin-like 19 264 IPR010658 -
Sed06g2020 596 SUPERFAMILY MFS general substrate transporter 216 550 IPR036259 -
Sed06g2020 596 Gene3D MFS general substrate transporter like domains 335 551 IPR036259 -
Sed06g2020 596 SUPERFAMILY MFS general substrate transporter 19 264 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0967 Sed-Chr1:7187661 Sed06g2020 Sed-Chr6:44310356 3.70E-192 dispersed
Sed01g2884 Sed-Chr1:24515583 Sed06g2020 Sed-Chr6:44310356 2.30E-202 dispersed
Sed02g0614 Sed-Chr2:43929007 Sed06g2020 Sed-Chr6:44310356 5.00E-202 dispersed
Sed03g2040 Sed-Chr3:14303667 Sed06g2020 Sed-Chr6:44310356 6.90E-183 dispersed
Sed04g1390 Sed-Chr4:28412251 Sed06g2020 Sed-Chr6:44310356 2.00E-198 dispersed
Sed06g2020 Sed-Chr6:44310356 Sed11g0380 Sed-Chr11:3637781 6.60E-144 dispersed
Sed11g1188 Sed-Chr11:27731790 Sed06g2020 Sed-Chr6:44310356 1.50E-153 transposed
Sed06g2020 Sed-Chr6:44310356 Sed07g2239 Sed-Chr7:38326758 1.70E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2020 - - - 0.0