Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2021 ATGTTTCCTGTTTTTTGTAATCTCAGAATGTTTCCTGTTTTTTGTAATCTCTTGATATTGATATCTGGTTTTTATGTCACGTTGGCTTCCTTCAATCTGACACTGCCCCATCAGCATCCTCATCCTGATTCTGTTGCTGATGAACTTCAAAGAACAGTCAATGCATCTGTTTGGAGAAGGCAAATGCTATCCATTGAATCAAAGGATGAAGCATTTTCCTGCCTCACGGGCAACCCGATCGACGACTGCTGGCGGTGCGACCCGAACTGGGCATCGAACCGGCAGCGGCTCGCCGACTGTGGGATCGGGTTCGGCCGAGACGCAGTCGGCGGCAAAGGCGGCAAGATCTACGTCGTCACGGACTCCTCCGATTCCGACCCGGCGAACCCAACTCCGGGGACGCTCCGCCACGCCGTGATCCAATTCGAGCCGCTGTGGATCATATTCTCGGCCGACATGACGATTAAGCTCAAATATGAACTGATCATCAACAACTTCAAAACGATCGACGGACGTGGCGCCAACGTCCACGTCACCGGCGGCGGTTGCATCACCATTCAATACGTGTCAAACATCATCATCCATAACATCCACGTGCACCACTGTAAACCCTCGGGCAATGCCAACATAAGGTCAACCCCGACCCATGTCGGCCATCGAGGGCTATCAGATGGGGACGGGATCTCGATATTCAGCTCGAGAAAGATTTGGATCGACCATTGTTCACTCTCATATTGCACAGACGGGCTAATAGACGCCATAATGGGATCGACAGGGATAACCATATCGAACAGCTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACCGATACGTGCAGGACTCGGGTATGCAAGTCACCATAGCCTTTAACCACTTCGGCGAGAATCTGGTTCAACGCATGCCTAGATGTAGACATGGCTACATTCATGTGGTCAACAATGACTTCACAGCTTGGGAAATGTATGCCATTGGAGGCAGTGCTCGGCCCACTATTAACAGCCAGGGTAACCGTTACATGGCTCCGGTCAACCCTAATGCCAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAGTGGGCGGGGTGGAACTGGCGGACGGAGGGCGATATTCTGGTGAACGGAGCATTTTTTGTGCCGTCCGGCGAAGGACTTAGCACTCAGTACGGCAAGGCCTCCAGCGTTGAGCCTAAATCTGTGGCTCTTATAAATCAACTCACTATGAACGCCGGCGTTTTGGGAGCCCCAAGGTATAATAACGATGAAGGGATTGTATATCCAGGATTTAGTGGTAATAATGGTGGCAACAATGAAGATGGATACGACGGTAACACTGTCATTAATAATAGTCCAATTTATGGAAATAATGGTGCCAATAATAATGAAGATTTCTACGGAATGATATTTAAAGCCAGTGGTTATAAAGTTTCACCATCATCATCATGGTTGATGAACTTGTGGATTCAACTTATAGTAGTTTTGTATATATATAGTCACATATTATAA 1521 48.85 MFPVFCNLRMFPVFCNLLILISGFYVTLASFNLTLPHQHPHPDSVADELQRTVNASVWRRQMLSIESKDEAFSCLTGNPIDDCWRCDPNWASNRQRLADCGIGFGRDAVGGKGGKIYVVTDSSDSDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINNFKTIDGRGANVHVTGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGENLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYMAPVNPNAKEVTRRLDAAETEWAGWNWRTEGDILVNGAFFVPSGEGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNNDEGIVYPGFSGNNGGNNEDGYDGNTVINNSPIYGNNGANNNEDFYGMIFKASGYKVSPSSSWLMNLWIQLIVVLYIYSHIL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44316771 44324676 - Sed0000819.1 Sed06g2021 718564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2021 506 PANTHER PECTATE LYASE 18-RELATED 27 420 IPR045032 GO:0030570(InterPro)
Sed06g2021 506 Gene3D - 77 419 IPR012334 -
Sed06g2021 506 Pfam Pectate lyase 162 338 IPR002022 -
Sed06g2021 506 SUPERFAMILY Pectin lyase-like 69 396 IPR011050 -
Sed06g2021 506 FunFam Pectate lyase 77 419 - -
Sed06g2021 506 SMART amb_all 152 349 IPR002022 -
Sed06g2021 506 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Sed06g2021 506 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Sed06g2021 506 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Sed06g2021 506 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Sed06g2021 506 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Sed06g2021 506 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Sed06g2021 506 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Sed06g2021 506 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2881 Sed-Chr1:24487977 Sed06g2021 Sed-Chr6:44316771 2.60E-186 dispersed
Sed01g2882 Sed-Chr1:24487977 Sed06g2021 Sed-Chr6:44316771 4.60E-156 dispersed
Sed03g2975 Sed-Chr3:46625827 Sed06g2021 Sed-Chr6:44316771 2.30E-42 dispersed
Sed06g2021 Sed-Chr6:44316771 Sed14g0373 Sed-Chr14:3871953 6.30E-180 dispersed
Sed06g2021 Sed-Chr6:44316771 Sed03g2037 Sed-Chr3:14287530 4.80E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2021 K01728 - csv:101205739 870.152