Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2021 | ATGTTTCCTGTTTTTTGTAATCTCAGAATGTTTCCTGTTTTTTGTAATCTCTTGATATTGATATCTGGTTTTTATGTCACGTTGGCTTCCTTCAATCTGACACTGCCCCATCAGCATCCTCATCCTGATTCTGTTGCTGATGAACTTCAAAGAACAGTCAATGCATCTGTTTGGAGAAGGCAAATGCTATCCATTGAATCAAAGGATGAAGCATTTTCCTGCCTCACGGGCAACCCGATCGACGACTGCTGGCGGTGCGACCCGAACTGGGCATCGAACCGGCAGCGGCTCGCCGACTGTGGGATCGGGTTCGGCCGAGACGCAGTCGGCGGCAAAGGCGGCAAGATCTACGTCGTCACGGACTCCTCCGATTCCGACCCGGCGAACCCAACTCCGGGGACGCTCCGCCACGCCGTGATCCAATTCGAGCCGCTGTGGATCATATTCTCGGCCGACATGACGATTAAGCTCAAATATGAACTGATCATCAACAACTTCAAAACGATCGACGGACGTGGCGCCAACGTCCACGTCACCGGCGGCGGTTGCATCACCATTCAATACGTGTCAAACATCATCATCCATAACATCCACGTGCACCACTGTAAACCCTCGGGCAATGCCAACATAAGGTCAACCCCGACCCATGTCGGCCATCGAGGGCTATCAGATGGGGACGGGATCTCGATATTCAGCTCGAGAAAGATTTGGATCGACCATTGTTCACTCTCATATTGCACAGACGGGCTAATAGACGCCATAATGGGATCGACAGGGATAACCATATCGAACAGCTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACCGATACGTGCAGGACTCGGGTATGCAAGTCACCATAGCCTTTAACCACTTCGGCGAGAATCTGGTTCAACGCATGCCTAGATGTAGACATGGCTACATTCATGTGGTCAACAATGACTTCACAGCTTGGGAAATGTATGCCATTGGAGGCAGTGCTCGGCCCACTATTAACAGCCAGGGTAACCGTTACATGGCTCCGGTCAACCCTAATGCCAAAGAGGTGACGAGACGTTTAGATGCGGCGGAGACGGAGTGGGCGGGGTGGAACTGGCGGACGGAGGGCGATATTCTGGTGAACGGAGCATTTTTTGTGCCGTCCGGCGAAGGACTTAGCACTCAGTACGGCAAGGCCTCCAGCGTTGAGCCTAAATCTGTGGCTCTTATAAATCAACTCACTATGAACGCCGGCGTTTTGGGAGCCCCAAGGTATAATAACGATGAAGGGATTGTATATCCAGGATTTAGTGGTAATAATGGTGGCAACAATGAAGATGGATACGACGGTAACACTGTCATTAATAATAGTCCAATTTATGGAAATAATGGTGCCAATAATAATGAAGATTTCTACGGAATGATATTTAAAGCCAGTGGTTATAAAGTTTCACCATCATCATCATGGTTGATGAACTTGTGGATTCAACTTATAGTAGTTTTGTATATATATAGTCACATATTATAA | 1521 | 48.85 | MFPVFCNLRMFPVFCNLLILISGFYVTLASFNLTLPHQHPHPDSVADELQRTVNASVWRRQMLSIESKDEAFSCLTGNPIDDCWRCDPNWASNRQRLADCGIGFGRDAVGGKGGKIYVVTDSSDSDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINNFKTIDGRGANVHVTGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGENLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYMAPVNPNAKEVTRRLDAAETEWAGWNWRTEGDILVNGAFFVPSGEGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNNDEGIVYPGFSGNNGGNNEDGYDGNTVINNSPIYGNNGANNNEDFYGMIFKASGYKVSPSSSWLMNLWIQLIVVLYIYSHIL | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44316771 | 44324676 | - | Sed0000819.1 | Sed06g2021 | 718564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2021 | 506 | PANTHER | PECTATE LYASE 18-RELATED | 27 | 420 | IPR045032 | GO:0030570(InterPro) | |
Sed06g2021 | 506 | Gene3D | - | 77 | 419 | IPR012334 | - | |
Sed06g2021 | 506 | Pfam | Pectate lyase | 162 | 338 | IPR002022 | - | |
Sed06g2021 | 506 | SUPERFAMILY | Pectin lyase-like | 69 | 396 | IPR011050 | - | |
Sed06g2021 | 506 | FunFam | Pectate lyase | 77 | 419 | - | - | |
Sed06g2021 | 506 | SMART | amb_all | 152 | 349 | IPR002022 | - | |
Sed06g2021 | 506 | PRINTS | Pollen allergen Amb family signature | 304 | 323 | IPR018082 | - | |
Sed06g2021 | 506 | PRINTS | Pollen allergen Amb family signature | 160 | 176 | IPR018082 | - | |
Sed06g2021 | 506 | PRINTS | Pollen allergen Amb family signature | 397 | 420 | IPR018082 | - | |
Sed06g2021 | 506 | PRINTS | Pollen allergen Amb family signature | 124 | 149 | IPR018082 | - | |
Sed06g2021 | 506 | PRINTS | Pollen allergen Amb family signature | 224 | 245 | IPR018082 | - | |
Sed06g2021 | 506 | PRINTS | Pollen allergen Amb family signature | 100 | 117 | IPR018082 | - | |
Sed06g2021 | 506 | PRINTS | Pollen allergen Amb family signature | 368 | 392 | IPR018082 | - | |
Sed06g2021 | 506 | PRINTS | Pollen allergen Amb family signature | 326 | 345 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2881 | Sed-Chr1:24487977 | Sed06g2021 | Sed-Chr6:44316771 | 2.60E-186 | dispersed | |
Sed01g2882 | Sed-Chr1:24487977 | Sed06g2021 | Sed-Chr6:44316771 | 4.60E-156 | dispersed | |
Sed03g2975 | Sed-Chr3:46625827 | Sed06g2021 | Sed-Chr6:44316771 | 2.30E-42 | dispersed | |
Sed06g2021 | Sed-Chr6:44316771 | Sed14g0373 | Sed-Chr14:3871953 | 6.30E-180 | dispersed | |
Sed06g2021 | Sed-Chr6:44316771 | Sed03g2037 | Sed-Chr3:14287530 | 4.80E-180 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2021 | K01728 | - | csv:101205739 | 870.152 |