Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2041 ATGACGAAAGATGACGTCACGGCTCGAGGGTTCTCCGGCAAGGACTACCACGACCCGCCGCCGGCTCCGCTGTTGGACGCGGCGGAGCTGTGCAAGTGGTCCTTTTACAGAGCCCTCATCGCCGAGTTTATCGCCACTCTTTTGTTTCTCTATGTCACCATCTTGACTGTCATTGGCTACAACAGCCAGACCGACCCCCAGAAAACCGGCGGCGCCGCCGATGCTTGCGGCGGCGTTGGCATTCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCGTGCTCGTCTACTGTACTGCCGGCATTTCTGGTGGACATATAAACCCGGCGGTCACATTCGGGCTGCTGTTAGCCCGTAAGGTGTCGCTGGTTCGAGCGGTGGCGTACATGGTGGCTCAGTGCTTGGGAGCCGTGTGCGGAGCCGGGCTGGTGAAGCTGCTGCAAAAGGACTACTACAACTTGTACGGCGGCGGCGCCAACCAGCTGGCCCACGGCTACAGCAAGGGCACCGGCTTGGGCGCCGAGATCGTGGGCACTTTCATCCTTGTCTACACCGTTTTCTCCGCCACCGATCCCAAGCGTAACGCTAGAGATTCCCATGTTCCTGTATTGGCTCCACTTCCAATTGGGTTTGCAGTGTTCATGGTTCACTTAGCCACAATCCCCATTACTGGCACCAGCATCAACCCTGCTAGAAGCTTTGGTCCAGCTCTTATCTTGAACAGGGAAAAGCCTTGGAATGACCAATGGATATTCTGGGTTGGGCCTTTCATCGGAGCCGCCATTGCAGCGTTTTACCACCAGTTCATTCTGAGAGCCGGCGCCGTCAAGGCTCTTGGCTCTTTCAGGAGCAACCCTTCCGTTTAA 867 57.09 MTKDDVTARGFSGKDYHDPPPAPLLDAAELCKWSFYRALIAEFIATLLFLYVTILTVIGYNSQTDPQKTGGAADACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVAYMVAQCLGAVCGAGLVKLLQKDYYNLYGGGANQLAHGYSKGTGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPALILNREKPWNDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPSV 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44490237 44496552 + Sed0006541.1 Sed06g2041 718584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2041 288 Pfam Major intrinsic protein 30 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 CDD MIP 37 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Sed06g2041 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 NCBIfam MIP family channel protein 41 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2041 288 SUPERFAMILY Aquaporin-like 29 272 IPR023271 -
Sed06g2041 288 Gene3D Glycerol uptake facilitator protein. 22 288 IPR023271 -
Sed06g2041 288 FunFam Probable aquaporin PIP1-2 22 286 - -
Sed06g2041 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2833 Sed-Chr1:23648384 Sed06g2041 Sed-Chr6:44490237 2.30E-131 dispersed
Sed04g3846 Sed-Chr4:46838222 Sed06g2041 Sed-Chr6:44490237 2.80E-121 dispersed
Sed06g2041 Sed-Chr6:44490237 Sed14g0415 Sed-Chr14:4313852 5.10E-134 dispersed
Sed06g2041 Sed-Chr6:44490237 Sed07g2268 Sed-Chr7:38529118 1.80E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2041 K09872 - csv:101204956 524.242