Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2041 | ATGACGAAAGATGACGTCACGGCTCGAGGGTTCTCCGGCAAGGACTACCACGACCCGCCGCCGGCTCCGCTGTTGGACGCGGCGGAGCTGTGCAAGTGGTCCTTTTACAGAGCCCTCATCGCCGAGTTTATCGCCACTCTTTTGTTTCTCTATGTCACCATCTTGACTGTCATTGGCTACAACAGCCAGACCGACCCCCAGAAAACCGGCGGCGCCGCCGATGCTTGCGGCGGCGTTGGCATTCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCGTGCTCGTCTACTGTACTGCCGGCATTTCTGGTGGACATATAAACCCGGCGGTCACATTCGGGCTGCTGTTAGCCCGTAAGGTGTCGCTGGTTCGAGCGGTGGCGTACATGGTGGCTCAGTGCTTGGGAGCCGTGTGCGGAGCCGGGCTGGTGAAGCTGCTGCAAAAGGACTACTACAACTTGTACGGCGGCGGCGCCAACCAGCTGGCCCACGGCTACAGCAAGGGCACCGGCTTGGGCGCCGAGATCGTGGGCACTTTCATCCTTGTCTACACCGTTTTCTCCGCCACCGATCCCAAGCGTAACGCTAGAGATTCCCATGTTCCTGTATTGGCTCCACTTCCAATTGGGTTTGCAGTGTTCATGGTTCACTTAGCCACAATCCCCATTACTGGCACCAGCATCAACCCTGCTAGAAGCTTTGGTCCAGCTCTTATCTTGAACAGGGAAAAGCCTTGGAATGACCAATGGATATTCTGGGTTGGGCCTTTCATCGGAGCCGCCATTGCAGCGTTTTACCACCAGTTCATTCTGAGAGCCGGCGCCGTCAAGGCTCTTGGCTCTTTCAGGAGCAACCCTTCCGTTTAA | 867 | 57.09 | MTKDDVTARGFSGKDYHDPPPAPLLDAAELCKWSFYRALIAEFIATLLFLYVTILTVIGYNSQTDPQKTGGAADACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVAYMVAQCLGAVCGAGLVKLLQKDYYNLYGGGANQLAHGYSKGTGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPALILNREKPWNDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPSV | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44490237 | 44496552 | + | Sed0006541.1 | Sed06g2041 | 718584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2041 | 288 | Pfam | Major intrinsic protein | 30 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | CDD | MIP | 37 | 270 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | ProSitePatterns | MIP family signature. | 106 | 114 | IPR022357 | - | |
Sed06g2041 | 288 | PRINTS | Major intrinsic protein family signature | 210 | 232 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | PRINTS | Major intrinsic protein family signature | 250 | 270 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | PRINTS | Major intrinsic protein family signature | 37 | 56 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | PRINTS | Major intrinsic protein family signature | 125 | 144 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | PRINTS | Major intrinsic protein family signature | 88 | 112 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | PRINTS | Major intrinsic protein family signature | 174 | 192 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | NCBIfam | MIP family channel protein | 41 | 267 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed06g2041 | 288 | SUPERFAMILY | Aquaporin-like | 29 | 272 | IPR023271 | - | |
Sed06g2041 | 288 | Gene3D | Glycerol uptake facilitator protein. | 22 | 288 | IPR023271 | - | |
Sed06g2041 | 288 | FunFam | Probable aquaporin PIP1-2 | 22 | 286 | - | - | |
Sed06g2041 | 288 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 8 | 284 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2833 | Sed-Chr1:23648384 | Sed06g2041 | Sed-Chr6:44490237 | 2.30E-131 | dispersed | |
Sed04g3846 | Sed-Chr4:46838222 | Sed06g2041 | Sed-Chr6:44490237 | 2.80E-121 | dispersed | |
Sed06g2041 | Sed-Chr6:44490237 | Sed14g0415 | Sed-Chr14:4313852 | 5.10E-134 | dispersed | |
Sed06g2041 | Sed-Chr6:44490237 | Sed07g2268 | Sed-Chr7:38529118 | 1.80E-139 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2041 | K09872 | - | csv:101204956 | 524.242 |