Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2046 | ATGGAGAAGAAGACATATCCGATCGGCGAAGATTACTATATTCTGTATGAGGAGGTCGGGCAGGGGGTGAGCGCTTCGGTTCATCGCGCTCTGTGTAAGCCTCTTAATGAGATCGTCGCCATTAAGATCCTCGATTTCGAGCGGGAGAATTGTGATCTGGTTAGCATTTCTCGTGAAGTACAGACAATGATCTTGGTCGACCACCCGAATGTTGTTAAATCACACTGCTCCTTTGTTCATGGCCATAATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATCTTGAAGGCTGCATATCCTGATGGTTTTGAAGAAATGCTCATAGCAACAGTATTACGAGAAGCAGGGAACGTTCTTATTGATTCTCGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATAGACAACGTGTGAGGAATACATTTGTGGGGACACCATGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGGTATAACTGGGTTAGAGCTTGCTCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCTGGCCTTGATTATGAGAGGGACAGAAAATTTTCTAAGTCCTTTAAGCAGATGATTGCTAGTTGCTTGGCAAAAGATCCTTCGAAACGACCTGCTGCAAGTAAGCTGCTAAAGCATGCATTTTTTAAGCAAGCCCGTTCAAGTGATTATATTTCACGGACCCTTTTGGAAGGGCTACCTGGTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAGATATCACAGAATGAATATAAACGAGGAATCAGTCAATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCATTGAAGTAGGGAGCTCAAATTCCTTATGTACACTTGATGTGCCAGAAAAGAAATTACAAGGCGGAAATTCTCTAGAGCTTTCAGATACAGAAGAGAATGGCATGCTGCGGAGACAACCTTCCATGAAGGCTTTTGATACAGTAGATATTAAAAGATCTAACAATGACTCTACAATTGTTGTTTCGTCCTCTCAACAACATTCCAAACCTCGTCATGATAATCAAACTGAGAATGGTACCAGTGAAGAGCTTCATTTAGAGAACAGCAAAAGAATATTGGGGAGTACTCCTAATTCTAGCCAACATAAAAAAAACATTTCTTCTAATAGCACAGTTCAACATGAAGTCAATTTGCCACTGAACAGAAGAAATAGTTATGAGACAGAAAAGAATGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAGGCGGCAGATGATGTGCTTTCTGATTCTCTTCCTAAAGATCCCAAGTCAACATCAAGTCCAGCAACTAATGATGAGGAACCAGACGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGAAAAGGCAACTGCATCCCCTGTTCTGCAAAAGAGTCACAGTATGCAGGTGATGAACTCAATTTCTGCTACTCCTCTACTGACACCTGTACCTTCGTCTGATGCTATACCAATTAATTCTAGATCTTCTATGTTTCCAGTGTTGCAATCTGTTTTGCAGAGAAATCTTGCTCAAAGGGATGATATTTTGACTCTAATGAGACAAATCTCTGTCGGAGATTTTCCAGCCGAGGGTGAGGCTGATGTCTCGGTGCCACAGACAACAACGACAGAGAGATCTTTGCTTGAAGCAGCTCATGAAAGGGAAAGGGATTTGCTCAACGAAGTAACTGACTTACAGTGGAGGATATTACGTGCTAAAGATGAGATCCAAAGATTAAAATTAAACAATACAGGTTAA | 2001 | 41.43 | MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLVSISREVQTMILVDHPNVVKSHCSFVHGHNLWIVMPYMSGGSCLHILKAAYPDGFEEMLIATVLREAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFGITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLAKDPSKRPAASKLLKHAFFKQARSSDYISRTLLEGLPGLGDRIKALKRKEEDMLAQKKMPDGKKEEISQNEYKRGISQWNFNLDDLKAQASLIQEFEESISEIIEVGSSNSLCTLDVPEKKLQGGNSLELSDTEENGMLRRQPSMKAFDTVDIKRSNNDSTIVVSSSQQHSKPRHDNQTENGTSEELHLENSKRILGSTPNSSQHKKNISSNSTVQHEVNLPLNRRNSYETEKNVANGSVAIGITSQAADDVLSDSLPKDPKSTSSPATNDEEPDEKAKVPVIQQKGRFKVTSENVDVEKATASPVLQKSHSMQVMNSISATPLLTPVPSSDAIPINSRSSMFPVLQSVLQRNLAQRDDILTLMRQISVGDFPAEGEADVSVPQTTTTERSLLEAAHERERDLLNEVTDLQWRILRAKDEIQRLKLNNTG | 666 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44514901 | 44524811 | + | Sed0012490.1 | Sed06g2046 | 718589 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2046 | 666 | ProSiteProfiles | Protein kinase domain profile. | 13 | 255 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2046 | 666 | FunFam | Serine/threonine-protein kinase BLUS1 | 2 | 90 | - | - | |
Sed06g2046 | 666 | MobiDBLite | consensus disorder prediction | 489 | 504 | - | - | |
Sed06g2046 | 666 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 1 | 665 | IPR047173 | GO:0043539(InterPro) | |
Sed06g2046 | 666 | FunFam | serine/threonine-protein kinase OSR1 | 94 | 271 | - | - | |
Sed06g2046 | 666 | MobiDBLite | consensus disorder prediction | 489 | 515 | - | - | |
Sed06g2046 | 666 | ProSitePatterns | Protein kinases ATP-binding region signature. | 19 | 42 | IPR017441 | GO:0005524(InterPro) | |
Sed06g2046 | 666 | MobiDBLite | consensus disorder prediction | 409 | 428 | - | - | |
Sed06g2046 | 666 | SMART | serkin_6 | 13 | 255 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2046 | 666 | SUPERFAMILY | Protein kinase-like (PK-like) | 11 | 256 | IPR011009 | - | |
Sed06g2046 | 666 | Gene3D | Transferase(Phosphotransferase) domain 1 | 118 | 270 | - | - | |
Sed06g2046 | 666 | Coils | Coil | 643 | 663 | - | - | |
Sed06g2046 | 666 | Pfam | Protein kinase domain | 15 | 102 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2046 | 666 | Pfam | Protein kinase domain | 121 | 255 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2046 | 666 | MobiDBLite | consensus disorder prediction | 430 | 463 | - | - | |
Sed06g2046 | 666 | MobiDBLite | consensus disorder prediction | 396 | 463 | - | - | |
Sed06g2046 | 666 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 89 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1388 | Sed-Chr5:26902759 | Sed06g2046 | Sed-Chr6:44514901 | 7.00E-269 | dispersed | |
Sed06g0543 | Sed-Chr6:4774716 | Sed06g2046 | Sed-Chr6:44514901 | 2.30E-136 | dispersed | |
Sed06g0544 | Sed-Chr6:4774716 | Sed06g2046 | Sed-Chr6:44514901 | 6.90E-136 | dispersed | |
Sed06g2046 | Sed-Chr6:44514901 | Sed07g2041 | Sed-Chr7:35534200 | 1.30E-39 | dispersed | |
Sed05g1387 | Sed-Chr5:26901591 | Sed06g2046 | Sed-Chr6:44514901 | 2.00E-301 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79398 | PF00069 | Pkinase | 1.30E-27 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2046 | K08835 | - | csv:101211076 | 1075.46 |