Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2046 ATGGAGAAGAAGACATATCCGATCGGCGAAGATTACTATATTCTGTATGAGGAGGTCGGGCAGGGGGTGAGCGCTTCGGTTCATCGCGCTCTGTGTAAGCCTCTTAATGAGATCGTCGCCATTAAGATCCTCGATTTCGAGCGGGAGAATTGTGATCTGGTTAGCATTTCTCGTGAAGTACAGACAATGATCTTGGTCGACCACCCGAATGTTGTTAAATCACACTGCTCCTTTGTTCATGGCCATAATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATCTTGAAGGCTGCATATCCTGATGGTTTTGAAGAAATGCTCATAGCAACAGTATTACGAGAAGCAGGGAACGTTCTTATTGATTCTCGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATAGACAACGTGTGAGGAATACATTTGTGGGGACACCATGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGGTATAACTGGGTTAGAGCTTGCTCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCTGGCCTTGATTATGAGAGGGACAGAAAATTTTCTAAGTCCTTTAAGCAGATGATTGCTAGTTGCTTGGCAAAAGATCCTTCGAAACGACCTGCTGCAAGTAAGCTGCTAAAGCATGCATTTTTTAAGCAAGCCCGTTCAAGTGATTATATTTCACGGACCCTTTTGGAAGGGCTACCTGGTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAGATATCACAGAATGAATATAAACGAGGAATCAGTCAATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCATTGAAGTAGGGAGCTCAAATTCCTTATGTACACTTGATGTGCCAGAAAAGAAATTACAAGGCGGAAATTCTCTAGAGCTTTCAGATACAGAAGAGAATGGCATGCTGCGGAGACAACCTTCCATGAAGGCTTTTGATACAGTAGATATTAAAAGATCTAACAATGACTCTACAATTGTTGTTTCGTCCTCTCAACAACATTCCAAACCTCGTCATGATAATCAAACTGAGAATGGTACCAGTGAAGAGCTTCATTTAGAGAACAGCAAAAGAATATTGGGGAGTACTCCTAATTCTAGCCAACATAAAAAAAACATTTCTTCTAATAGCACAGTTCAACATGAAGTCAATTTGCCACTGAACAGAAGAAATAGTTATGAGACAGAAAAGAATGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAGGCGGCAGATGATGTGCTTTCTGATTCTCTTCCTAAAGATCCCAAGTCAACATCAAGTCCAGCAACTAATGATGAGGAACCAGACGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGAAAAGGCAACTGCATCCCCTGTTCTGCAAAAGAGTCACAGTATGCAGGTGATGAACTCAATTTCTGCTACTCCTCTACTGACACCTGTACCTTCGTCTGATGCTATACCAATTAATTCTAGATCTTCTATGTTTCCAGTGTTGCAATCTGTTTTGCAGAGAAATCTTGCTCAAAGGGATGATATTTTGACTCTAATGAGACAAATCTCTGTCGGAGATTTTCCAGCCGAGGGTGAGGCTGATGTCTCGGTGCCACAGACAACAACGACAGAGAGATCTTTGCTTGAAGCAGCTCATGAAAGGGAAAGGGATTTGCTCAACGAAGTAACTGACTTACAGTGGAGGATATTACGTGCTAAAGATGAGATCCAAAGATTAAAATTAAACAATACAGGTTAA 2001 41.43 MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLVSISREVQTMILVDHPNVVKSHCSFVHGHNLWIVMPYMSGGSCLHILKAAYPDGFEEMLIATVLREAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFGITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLAKDPSKRPAASKLLKHAFFKQARSSDYISRTLLEGLPGLGDRIKALKRKEEDMLAQKKMPDGKKEEISQNEYKRGISQWNFNLDDLKAQASLIQEFEESISEIIEVGSSNSLCTLDVPEKKLQGGNSLELSDTEENGMLRRQPSMKAFDTVDIKRSNNDSTIVVSSSQQHSKPRHDNQTENGTSEELHLENSKRILGSTPNSSQHKKNISSNSTVQHEVNLPLNRRNSYETEKNVANGSVAIGITSQAADDVLSDSLPKDPKSTSSPATNDEEPDEKAKVPVIQQKGRFKVTSENVDVEKATASPVLQKSHSMQVMNSISATPLLTPVPSSDAIPINSRSSMFPVLQSVLQRNLAQRDDILTLMRQISVGDFPAEGEADVSVPQTTTTERSLLEAAHERERDLLNEVTDLQWRILRAKDEIQRLKLNNTG 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44514901 44524811 + Sed0012490.1 Sed06g2046 718589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2046 666 ProSiteProfiles Protein kinase domain profile. 13 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2046 666 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Sed06g2046 666 MobiDBLite consensus disorder prediction 489 504 - -
Sed06g2046 666 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 665 IPR047173 GO:0043539(InterPro)
Sed06g2046 666 FunFam serine/threonine-protein kinase OSR1 94 271 - -
Sed06g2046 666 MobiDBLite consensus disorder prediction 489 515 - -
Sed06g2046 666 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Sed06g2046 666 MobiDBLite consensus disorder prediction 409 428 - -
Sed06g2046 666 SMART serkin_6 13 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2046 666 SUPERFAMILY Protein kinase-like (PK-like) 11 256 IPR011009 -
Sed06g2046 666 Gene3D Transferase(Phosphotransferase) domain 1 118 270 - -
Sed06g2046 666 Coils Coil 643 663 - -
Sed06g2046 666 Pfam Protein kinase domain 15 102 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2046 666 Pfam Protein kinase domain 121 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2046 666 MobiDBLite consensus disorder prediction 430 463 - -
Sed06g2046 666 MobiDBLite consensus disorder prediction 396 463 - -
Sed06g2046 666 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2046 K08835 - - csv:101211076 1075.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1388 Sed-Chr5:26902759 Sed06g2046 Sed-Chr6:44514901 7.00E-269 dispersed
Sed06g0543 Sed-Chr6:4774716 Sed06g2046 Sed-Chr6:44514901 2.30E-136 dispersed
Sed06g0544 Sed-Chr6:4774716 Sed06g2046 Sed-Chr6:44514901 6.90E-136 dispersed
Sed06g2046 Sed-Chr6:44514901 Sed07g2041 Sed-Chr7:35534200 1.30E-39 dispersed
Sed05g1387 Sed-Chr5:26901591 Sed06g2046 Sed-Chr6:44514901 2.00E-301 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2410 . 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 60.9 9.7e-216 747.7
Sed05g2557 . 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 60.5 5.9e-213 738.4
Sed07g2041 . 253 513 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.0e-67 255.0
Sed04g2410 . 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 63.0 1.8e-225 780.0
Sed05g2557 . 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 60.8 9.8e-216 747.7
Sed07g2041 . 253 513 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 8.9e-68 256.1
Sed07g2041 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 3.3e-239 825.9
Sed04g2410 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.0 1.5e-66 252.3
Sed03g0133 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.9 9.1e-251 864.0
Sed03g0134 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.9 9.1e-251 864.0
Sed06g0543 . 31 615 MAP Kinase Kinase Kinase Kinase AT5G14720 56.3 2.6e-189 659.8
Sed06g0544 . 31 621 MAP Kinase Kinase Kinase Kinase AT5G14720 55.8 1.9e-187 653.7
Sed03g0135 . 2 519 MAP Kinase Kinase Kinase Kinase AT5G14720 64.4 3.9e-177 619.4
Sed04g0924 . 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 63.4 5.8e-243 838.2
Sed04g0925 . 7 723 MAP Kinase Kinase Kinase Kinase AT4G24100 63.2 4.9e-242 835.1
Sed04g0926 . 1 653 MAP Kinase Kinase Kinase Kinase AT4G24100 62.4 3.0e-215 746.1
Sed06g0543 . 31 379 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 1.4e-132 471.5
Sed06g0544 . 31 379 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 1.4e-132 471.5
Sed04g0924 . 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.3 2.9e-244 842.4
Sed04g0925 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 64.1 6.5e-244 841.3
Sed04g0926 . 1 654 MAP Kinase Kinase Kinase Kinase AT4G10730 63.1 1.2e-216 750.7
Sed05g1387 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.5 1.6e-129 461.1
Sed04g0924 . 5 368 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 6.2e-118 422.5
Sed04g0925 . 5 368 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 6.2e-118 422.5
Sed05g1388 . 1 305 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 6.0e-113 406.0
Sed04g0926 . 1 301 MAP Kinase Kinase Kinase Kinase AT1G70430 60.9 1.7e-102 371.3
Sed05g1387 . 1 684 MAP Kinase Kinase Kinase Kinase AT1G79640 59.4 9.1e-211 731.1
Sed06g2046 . 1 649 MAP Kinase Kinase Kinase Kinase AT1G79640 58.0 1.2e-202 704.1
Sed05g1388 . 1 622 MAP Kinase Kinase Kinase Kinase AT1G79640 57.9 2.1e-183 640.2
Sed06g0543 . 31 378 MAP Kinase Kinase Kinase Kinase AT1G79640 68.4 3.9e-145 513.1
Sed06g0544 . 31 378 MAP Kinase Kinase Kinase Kinase AT1G79640 68.4 3.9e-145 513.1
Sed03g0133 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 9.2e-104 375.2
Sed03g0134 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 9.2e-104 375.2
Sed06g0543 . 26 352 MAP Kinase Kinase Kinase Kinase AT1G23700 57.6 6.4e-97 352.4
Sed06g0544 . 26 352 MAP Kinase Kinase Kinase Kinase AT1G23700 57.6 6.4e-97 352.4
Sed05g1387 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.6e-85 312.8
Sed04g0924 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 2.4e-75 280.8
Sed04g0925 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 2.4e-75 280.8
Sed05g1388 . 3 262 MAP Kinase Kinase Kinase Kinase AT1G23700 54.4 6.9e-75 279.3
Sed04g0926 . 1 239 MAP Kinase Kinase Kinase Kinase AT1G23700 53.7 1.4e-64 245.0
Sed03g0135 . 2 188 MAP Kinase Kinase Kinase Kinase AT1G23700 56.3 2.6e-50 197.6
Sed02g1388 . 30 496 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.5e-141 500.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79398 PF00069 Pkinase 1.30E-27 CL0016 Sed PK