Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2046 ATGGAGAAGAAGACATATCCGATCGGCGAAGATTACTATATTCTGTATGAGGAGGTCGGGCAGGGGGTGAGCGCTTCGGTTCATCGCGCTCTGTGTAAGCCTCTTAATGAGATCGTCGCCATTAAGATCCTCGATTTCGAGCGGGAGAATTGTGATCTGGTTAGCATTTCTCGTGAAGTACAGACAATGATCTTGGTCGACCACCCGAATGTTGTTAAATCACACTGCTCCTTTGTTCATGGCCATAATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATCTTGAAGGCTGCATATCCTGATGGTTTTGAAGAAATGCTCATAGCAACAGTATTACGAGAAGCAGGGAACGTTCTTATTGATTCTCGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATAGACAACGTGTGAGGAATACATTTGTGGGGACACCATGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGGTATAACTGGGTTAGAGCTTGCTCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCTGGCCTTGATTATGAGAGGGACAGAAAATTTTCTAAGTCCTTTAAGCAGATGATTGCTAGTTGCTTGGCAAAAGATCCTTCGAAACGACCTGCTGCAAGTAAGCTGCTAAAGCATGCATTTTTTAAGCAAGCCCGTTCAAGTGATTATATTTCACGGACCCTTTTGGAAGGGCTACCTGGTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAGATATCACAGAATGAATATAAACGAGGAATCAGTCAATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCATTGAAGTAGGGAGCTCAAATTCCTTATGTACACTTGATGTGCCAGAAAAGAAATTACAAGGCGGAAATTCTCTAGAGCTTTCAGATACAGAAGAGAATGGCATGCTGCGGAGACAACCTTCCATGAAGGCTTTTGATACAGTAGATATTAAAAGATCTAACAATGACTCTACAATTGTTGTTTCGTCCTCTCAACAACATTCCAAACCTCGTCATGATAATCAAACTGAGAATGGTACCAGTGAAGAGCTTCATTTAGAGAACAGCAAAAGAATATTGGGGAGTACTCCTAATTCTAGCCAACATAAAAAAAACATTTCTTCTAATAGCACAGTTCAACATGAAGTCAATTTGCCACTGAACAGAAGAAATAGTTATGAGACAGAAAAGAATGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAGGCGGCAGATGATGTGCTTTCTGATTCTCTTCCTAAAGATCCCAAGTCAACATCAAGTCCAGCAACTAATGATGAGGAACCAGACGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGAAAAGGCAACTGCATCCCCTGTTCTGCAAAAGAGTCACAGTATGCAGGTGATGAACTCAATTTCTGCTACTCCTCTACTGACACCTGTACCTTCGTCTGATGCTATACCAATTAATTCTAGATCTTCTATGTTTCCAGTGTTGCAATCTGTTTTGCAGAGAAATCTTGCTCAAAGGGATGATATTTTGACTCTAATGAGACAAATCTCTGTCGGAGATTTTCCAGCCGAGGGTGAGGCTGATGTCTCGGTGCCACAGACAACAACGACAGAGAGATCTTTGCTTGAAGCAGCTCATGAAAGGGAAAGGGATTTGCTCAACGAAGTAACTGACTTACAGTGGAGGATATTACGTGCTAAAGATGAGATCCAAAGATTAAAATTAAACAATACAGGTTAA 2001 41.43 MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLVSISREVQTMILVDHPNVVKSHCSFVHGHNLWIVMPYMSGGSCLHILKAAYPDGFEEMLIATVLREAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFGITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLAKDPSKRPAASKLLKHAFFKQARSSDYISRTLLEGLPGLGDRIKALKRKEEDMLAQKKMPDGKKEEISQNEYKRGISQWNFNLDDLKAQASLIQEFEESISEIIEVGSSNSLCTLDVPEKKLQGGNSLELSDTEENGMLRRQPSMKAFDTVDIKRSNNDSTIVVSSSQQHSKPRHDNQTENGTSEELHLENSKRILGSTPNSSQHKKNISSNSTVQHEVNLPLNRRNSYETEKNVANGSVAIGITSQAADDVLSDSLPKDPKSTSSPATNDEEPDEKAKVPVIQQKGRFKVTSENVDVEKATASPVLQKSHSMQVMNSISATPLLTPVPSSDAIPINSRSSMFPVLQSVLQRNLAQRDDILTLMRQISVGDFPAEGEADVSVPQTTTTERSLLEAAHERERDLLNEVTDLQWRILRAKDEIQRLKLNNTG 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44514901 44524811 + Sed0012490.1 Sed06g2046 718589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2046 666 ProSiteProfiles Protein kinase domain profile. 13 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2046 666 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Sed06g2046 666 MobiDBLite consensus disorder prediction 489 504 - -
Sed06g2046 666 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 665 IPR047173 GO:0043539(InterPro)
Sed06g2046 666 FunFam serine/threonine-protein kinase OSR1 94 271 - -
Sed06g2046 666 MobiDBLite consensus disorder prediction 489 515 - -
Sed06g2046 666 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Sed06g2046 666 MobiDBLite consensus disorder prediction 409 428 - -
Sed06g2046 666 SMART serkin_6 13 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2046 666 SUPERFAMILY Protein kinase-like (PK-like) 11 256 IPR011009 -
Sed06g2046 666 Gene3D Transferase(Phosphotransferase) domain 1 118 270 - -
Sed06g2046 666 Coils Coil 643 663 - -
Sed06g2046 666 Pfam Protein kinase domain 15 102 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2046 666 Pfam Protein kinase domain 121 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2046 666 MobiDBLite consensus disorder prediction 430 463 - -
Sed06g2046 666 MobiDBLite consensus disorder prediction 396 463 - -
Sed06g2046 666 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1388 Sed-Chr5:26902759 Sed06g2046 Sed-Chr6:44514901 7.00E-269 dispersed
Sed06g0543 Sed-Chr6:4774716 Sed06g2046 Sed-Chr6:44514901 2.30E-136 dispersed
Sed06g0544 Sed-Chr6:4774716 Sed06g2046 Sed-Chr6:44514901 6.90E-136 dispersed
Sed06g2046 Sed-Chr6:44514901 Sed07g2041 Sed-Chr7:35534200 1.30E-39 dispersed
Sed05g1387 Sed-Chr5:26901591 Sed06g2046 Sed-Chr6:44514901 2.00E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79398 PF00069 Pkinase 1.30E-27 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2046 K08835 - csv:101211076 1075.46