Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2048 | ATGGGGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCGGCATCTGCTATAAACCTCAGGGAGGCAATTAATAATCGACCATCGGCCTCTGGAAGGGTGCCTTTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTTAGATCTTGGATTCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGATTGATAAGTTCACCGTGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGCTTGCTTGATCCGTTGTTTGTTTACCCTTCAACGATTCTTGGTAGAGAGAAGGCCATTGTGGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTGTTGCTGTTAAATTCTCTCGATAGTTATGTATTGCAGTATGTGGTTGAGCTGCAAAGGCGATTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGATGGAAATCATGGAGCAGACTTAAATCGAAGAAGAGGAAGTAGGAATCTCGATAATATATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAATTTAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCTCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTTCGTCGCTTGAAAAGCAGACTTGTTGCTCTGACTCGCAGGGTTCAGAAGGTTAGGGATGAAATTGAGCAGCTCATGGATGATGATGGAGATATGGCAGAGATGTATCTAACCGAGAAGAAAATGAGAATGGAGTCCTTTGCTTATGGTGATCAGTCTGTGACTGGATACAAATCAATTGATGGAGCATCGATTTCCGCTCCTGTTTCTCCCGTATCTTCACCACCCGAAACTCGCAAGCTTGAGAAGAGCCTGAGCATTGCAAGGAGCCGACATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAATATAGAAGAGCTCGAGATGCTTCTCGAAGCATATTTTGTTGTCATCGATAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACGGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAATTCGAGCTGCTACTCACAACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGCATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGAAGCATTCAAATGGGTGCTTCTAATTACAGGGGTAAGTGGAATAATCATATTTTCTGCATTTATTTGGTTTTTCAGATACAAAAGGCTGATGTCAATTTAA | 1344 | 42.86 | MGDLKERLLPPKPASAINLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEIDKFTVMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNLDNIFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFAYGDQSVTGYKSIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPEAFKWVLLITGVSGIIIFSAFIWFFRYKRLMSI | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44545785 | 44550710 | + | Sed0019886.1 | Sed06g2048 | 718591 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2048 | 447 | Gene3D | Magnesium transport protein CorA, transmembrane region | 125 | 378 | - | - | |
Sed06g2048 | 447 | Gene3D | - | 41 | 124 | - | - | |
Sed06g2048 | 447 | CDD | Mrs2_Mfm1p-like | 53 | 444 | IPR039204 | - | |
Sed06g2048 | 447 | Gene3D | Magnesium transport protein CorA, transmembrane region | 385 | 445 | - | - | |
Sed06g2048 | 447 | FunFam | Magnesium transporter MRS2-1 | 385 | 445 | - | - | |
Sed06g2048 | 447 | Coils | Coil | 228 | 255 | - | - | |
Sed06g2048 | 447 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 36 | 444 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
Sed06g2048 | 447 | Pfam | Magnesium transporter MRS2-like | 57 | 271 | - | - | |
Sed06g2048 | 447 | Pfam | CorA-like Mg2+ transporter protein | 339 | 435 | IPR002523 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro) | |
Sed06g2048 | 447 | FunFam | Magnesium transporter MRS2-1 | 41 | 124 | - | - | |
Sed06g2048 | 447 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 384 | 437 | IPR045863 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2573 | Sed-Chr3:41095198 | Sed06g2048 | Sed-Chr6:44545785 | 2.00E-106 | dispersed | |
Sed04g1953 | Sed-Chr4:34210691 | Sed06g2048 | Sed-Chr6:44545785 | 1.30E-87 | dispersed | |
Sed05g0080 | Sed-Chr5:431442 | Sed06g2048 | Sed-Chr6:44545785 | 1.30E-84 | dispersed | |
Sed05g2636 | Sed-Chr5:37936720 | Sed06g2048 | Sed-Chr6:44545785 | 1.20E-90 | dispersed | |
Sed06g2048 | Sed-Chr6:44545785 | Sed10g1946 | Sed-Chr10:36189412 | 2.70E-89 | dispersed | |
Sed05g1392 | Sed-Chr5:26967057 | Sed06g2048 | Sed-Chr6:44545785 | 1.40E-231 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2048 | K16075 | - | csv:101217419 | 810.831 |