Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2048 ATGGGGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCGGCATCTGCTATAAACCTCAGGGAGGCAATTAATAATCGACCATCGGCCTCTGGAAGGGTGCCTTTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTTAGATCTTGGATTCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGATTGATAAGTTCACCGTGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGCTTGCTTGATCCGTTGTTTGTTTACCCTTCAACGATTCTTGGTAGAGAGAAGGCCATTGTGGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTGTTGCTGTTAAATTCTCTCGATAGTTATGTATTGCAGTATGTGGTTGAGCTGCAAAGGCGATTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGATGGAAATCATGGAGCAGACTTAAATCGAAGAAGAGGAAGTAGGAATCTCGATAATATATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAATTTAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCTCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTTCGTCGCTTGAAAAGCAGACTTGTTGCTCTGACTCGCAGGGTTCAGAAGGTTAGGGATGAAATTGAGCAGCTCATGGATGATGATGGAGATATGGCAGAGATGTATCTAACCGAGAAGAAAATGAGAATGGAGTCCTTTGCTTATGGTGATCAGTCTGTGACTGGATACAAATCAATTGATGGAGCATCGATTTCCGCTCCTGTTTCTCCCGTATCTTCACCACCCGAAACTCGCAAGCTTGAGAAGAGCCTGAGCATTGCAAGGAGCCGACATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAATATAGAAGAGCTCGAGATGCTTCTCGAAGCATATTTTGTTGTCATCGATAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACGGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAATTCGAGCTGCTACTCACAACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGCATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGAAGCATTCAAATGGGTGCTTCTAATTACAGGGGTAAGTGGAATAATCATATTTTCTGCATTTATTTGGTTTTTCAGATACAAAAGGCTGATGTCAATTTAA 1344 42.86 MGDLKERLLPPKPASAINLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEIDKFTVMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNLDNIFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFAYGDQSVTGYKSIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPEAFKWVLLITGVSGIIIFSAFIWFFRYKRLMSI 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44545785 44550710 + Sed0019886.1 Sed06g2048 718591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2048 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Sed06g2048 447 Gene3D - 41 124 - -
Sed06g2048 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Sed06g2048 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Sed06g2048 447 FunFam Magnesium transporter MRS2-1 385 445 - -
Sed06g2048 447 Coils Coil 228 255 - -
Sed06g2048 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed06g2048 447 Pfam Magnesium transporter MRS2-like 57 271 - -
Sed06g2048 447 Pfam CorA-like Mg2+ transporter protein 339 435 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Sed06g2048 447 FunFam Magnesium transporter MRS2-1 41 124 - -
Sed06g2048 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2573 Sed-Chr3:41095198 Sed06g2048 Sed-Chr6:44545785 2.00E-106 dispersed
Sed04g1953 Sed-Chr4:34210691 Sed06g2048 Sed-Chr6:44545785 1.30E-87 dispersed
Sed05g0080 Sed-Chr5:431442 Sed06g2048 Sed-Chr6:44545785 1.30E-84 dispersed
Sed05g2636 Sed-Chr5:37936720 Sed06g2048 Sed-Chr6:44545785 1.20E-90 dispersed
Sed06g2048 Sed-Chr6:44545785 Sed10g1946 Sed-Chr10:36189412 2.70E-89 dispersed
Sed05g1392 Sed-Chr5:26967057 Sed06g2048 Sed-Chr6:44545785 1.40E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2048 K16075 - csv:101217419 810.831