Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2051 ATGGCGCCGACGCCGGCGACGGCGAGGAACGTGCTGTTTGGGAAATACGAAATGGGACGTTTATTGGGGAAAGGGACCTTTGCGAAGGTTTATTATGGAAGAAACTTGATGACGCATGAAAGCGTCGCCATTAAAGTGGTGCTTAAAGACAGAGTGAAGAAAGAGGGGCTTTTGGATCAAATCCGGCGAGAAATTTCTGTAATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCAACGAAATCCAAGGTGTATTTTGTGATGGAGTACGTTAATGGAGGTGAACTGTTTGTGAAAATGTCTGAACGAGGAAAGTTATCAGAAGATGAAGCTAGAAAGTATTTTCAACAGCTTCTATCTGCTGTAGACTTTTGTCATAGCCGTGGTGTATCTCACCGTGATTTGAAGCCTGAAAATCTCCTTTTAGATGACAATGGGAACTTGAAGGTTTCAGATTTCGGCCTCTCCGCCCTCCCGGAGCAGCTCCGGATTGACGGGTTGCTTCACACAAGGTGTGGAACCCCATCGTATGTCGCCCCGGATGTTCTCCGGAAGCGAGGCTACGACGGGGCCAAGGCCGACATCTGGTCTTGTGGGGTGATATTGTTTGTGTTGATTGCTGGAACTTTGCCTTTTAAAGCTGATAATGTGATGAAATTGTATAGGAAGATTTTCAAGGCTGAGTTTGAGTTTCCTCCTTGGTTTTCTTCAGAAGCTATGGAAATTGTGTCTAAAGTTCTTGTTGTTGATCCTGAGAAAAGGGTTTCAATGGCTGAGATAATGGGAAGTTCTTGGTTTCAAAAGGGCTTTACAAAGGAAGTGTCATTTAGTGAGAAAGATGAGTTCAACAATGAGATTTCTGAATTGGGAAATTCCAAATTGTTTTCATCTTCTCCACCTTTTTACAATGCATTTGAGTTCATTTCCTCAATGTCCTCTGGCTTTGACTTGTCTAGTTTGTTTGAAACCAAGAAGAAACAAGCCTCCATTTTCACTTCAAAGTGCTCTGCTTCAGCCATTATAGCCAAGCTTCAATCTCTAGCTGTGAAGCTGAATTTCAAGGCTACTAAATTTGAGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAGGGGAGGAAAGGGAAGTTGTCGGTCACGGTGGAGGTTTTCGAGGCGGCACAGGAGCTGGCAGTTGTCGAGTTCTCGAAGTCGGCTGGGGACACTTTGGAGTATAATAAGTTCTATGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGGGAGAATGAGTGCCTATAA 1308 44.72 MAPTPATARNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVVLKDRVKKEGLLDQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKMSERGKLSEDEARKYFQQLLSAVDFCHSRGVSHRDLKPENLLLDDNGNLKVSDFGLSALPEQLRIDGLLHTRCGTPSYVAPDVLRKRGYDGAKADIWSCGVILFVLIAGTLPFKADNVMKLYRKIFKAEFEFPPWFSSEAMEIVSKVLVVDPEKRVSMAEIMGSSWFQKGFTKEVSFSEKDEFNNEISELGNSKLFSSSPPFYNAFEFISSMSSGFDLSSLFETKKKQASIFTSKCSASAIIAKLQSLAVKLNFKATKFEEFKVRLQAKEEGRKGKLSVTVEVFEAAQELAVVEFSKSAGDTLEYNKFYEKDVRPALKDIVWSWQGENECL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44599024 44600983 + Sed0015524.1 Sed06g2051 718594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2051 435 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165(InterPro)
Sed06g2051 435 Gene3D Kinase associated domain 1, KA1 307 427 - -
Sed06g2051 435 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Sed06g2051 435 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
Sed06g2051 435 CDD CIPK_C 308 422 - -
Sed06g2051 435 SUPERFAMILY Protein kinase-like (PK-like) 12 282 IPR011009 -
Sed06g2051 435 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2051 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 419 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed06g2051 435 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2051 435 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Sed06g2051 435 Pfam NAF domain 304 362 IPR004041 GO:0007165(InterPro)
Sed06g2051 435 FunFam Non-specific serine/threonine protein kinase 302 426 - -
Sed06g2051 435 Gene3D Transferase(Phosphotransferase) domain 1 8 306 - -
Sed06g2051 435 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2051 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0758 Sed-Chr2:45295352 Sed06g2051 Sed-Chr6:44599024 1.00E-42 dispersed
Sed05g1737 Sed-Chr5:31229042 Sed06g2051 Sed-Chr6:44599024 5.80E-169 dispersed
Sed06g2051 Sed-Chr6:44599024 Sed14g0587 Sed-Chr14:5939868 1.10E-132 dispersed
Sed12g2295 Sed-Chr12:33140273 Sed06g2051 Sed-Chr6:44599024 1.20E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79399 PF00069 Pkinase 6.50E-74 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2051 - - - 0.0