Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2051 | ATGGCGCCGACGCCGGCGACGGCGAGGAACGTGCTGTTTGGGAAATACGAAATGGGACGTTTATTGGGGAAAGGGACCTTTGCGAAGGTTTATTATGGAAGAAACTTGATGACGCATGAAAGCGTCGCCATTAAAGTGGTGCTTAAAGACAGAGTGAAGAAAGAGGGGCTTTTGGATCAAATCCGGCGAGAAATTTCTGTAATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCAACGAAATCCAAGGTGTATTTTGTGATGGAGTACGTTAATGGAGGTGAACTGTTTGTGAAAATGTCTGAACGAGGAAAGTTATCAGAAGATGAAGCTAGAAAGTATTTTCAACAGCTTCTATCTGCTGTAGACTTTTGTCATAGCCGTGGTGTATCTCACCGTGATTTGAAGCCTGAAAATCTCCTTTTAGATGACAATGGGAACTTGAAGGTTTCAGATTTCGGCCTCTCCGCCCTCCCGGAGCAGCTCCGGATTGACGGGTTGCTTCACACAAGGTGTGGAACCCCATCGTATGTCGCCCCGGATGTTCTCCGGAAGCGAGGCTACGACGGGGCCAAGGCCGACATCTGGTCTTGTGGGGTGATATTGTTTGTGTTGATTGCTGGAACTTTGCCTTTTAAAGCTGATAATGTGATGAAATTGTATAGGAAGATTTTCAAGGCTGAGTTTGAGTTTCCTCCTTGGTTTTCTTCAGAAGCTATGGAAATTGTGTCTAAAGTTCTTGTTGTTGATCCTGAGAAAAGGGTTTCAATGGCTGAGATAATGGGAAGTTCTTGGTTTCAAAAGGGCTTTACAAAGGAAGTGTCATTTAGTGAGAAAGATGAGTTCAACAATGAGATTTCTGAATTGGGAAATTCCAAATTGTTTTCATCTTCTCCACCTTTTTACAATGCATTTGAGTTCATTTCCTCAATGTCCTCTGGCTTTGACTTGTCTAGTTTGTTTGAAACCAAGAAGAAACAAGCCTCCATTTTCACTTCAAAGTGCTCTGCTTCAGCCATTATAGCCAAGCTTCAATCTCTAGCTGTGAAGCTGAATTTCAAGGCTACTAAATTTGAGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAGGGGAGGAAAGGGAAGTTGTCGGTCACGGTGGAGGTTTTCGAGGCGGCACAGGAGCTGGCAGTTGTCGAGTTCTCGAAGTCGGCTGGGGACACTTTGGAGTATAATAAGTTCTATGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGGGAGAATGAGTGCCTATAA | 1308 | 44.72 | MAPTPATARNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVVLKDRVKKEGLLDQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKMSERGKLSEDEARKYFQQLLSAVDFCHSRGVSHRDLKPENLLLDDNGNLKVSDFGLSALPEQLRIDGLLHTRCGTPSYVAPDVLRKRGYDGAKADIWSCGVILFVLIAGTLPFKADNVMKLYRKIFKAEFEFPPWFSSEAMEIVSKVLVVDPEKRVSMAEIMGSSWFQKGFTKEVSFSEKDEFNNEISELGNSKLFSSSPPFYNAFEFISSMSSGFDLSSLFETKKKQASIFTSKCSASAIIAKLQSLAVKLNFKATKFEEFKVRLQAKEEGRKGKLSVTVEVFEAAQELAVVEFSKSAGDTLEYNKFYEKDVRPALKDIVWSWQGENECL | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44599024 | 44600983 | + | Sed0015524.1 | Sed06g2051 | 718594 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2051 | 435 | ProSiteProfiles | NAF domain profile. | 302 | 327 | IPR018451 | GO:0007165(InterPro) | |
Sed06g2051 | 435 | Gene3D | Kinase associated domain 1, KA1 | 307 | 427 | - | - | |
Sed06g2051 | 435 | FunFam | Non-specific serine/threonine protein kinase | 9 | 299 | - | - | |
Sed06g2051 | 435 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 54 | IPR017441 | GO:0005524(InterPro) | |
Sed06g2051 | 435 | CDD | CIPK_C | 308 | 422 | - | - | |
Sed06g2051 | 435 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 282 | IPR011009 | - | |
Sed06g2051 | 435 | ProSiteProfiles | Protein kinase domain profile. | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2051 | 435 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 8 | 419 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Sed06g2051 | 435 | SMART | serkin_6 | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2051 | 435 | FunFam | Non-specific serine/threonine protein kinase | 7 | 95 | - | - | |
Sed06g2051 | 435 | Pfam | NAF domain | 304 | 362 | IPR004041 | GO:0007165(InterPro) | |
Sed06g2051 | 435 | FunFam | Non-specific serine/threonine protein kinase | 302 | 426 | - | - | |
Sed06g2051 | 435 | Gene3D | Transferase(Phosphotransferase) domain 1 | 8 | 306 | - | - | |
Sed06g2051 | 435 | Pfam | Protein kinase domain | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2051 | 435 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0758 | Sed-Chr2:45295352 | Sed06g2051 | Sed-Chr6:44599024 | 1.00E-42 | dispersed | |
Sed05g1737 | Sed-Chr5:31229042 | Sed06g2051 | Sed-Chr6:44599024 | 5.80E-169 | dispersed | |
Sed06g2051 | Sed-Chr6:44599024 | Sed14g0587 | Sed-Chr14:5939868 | 1.10E-132 | dispersed | |
Sed12g2295 | Sed-Chr12:33140273 | Sed06g2051 | Sed-Chr6:44599024 | 1.20E-131 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79399 | PF00069 | Pkinase | 6.50E-74 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2051 | - | - | - | 0.0 |