Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g2052 | ATGGCGGCTGGAGGGTCTAATTCTGGGCAGCCACAGTTCCTTGCTAGGGCTGGAGGGGAGAGTTTATCGCACGCGCCGCTGATCGAGAACTCGGAAACTGATCAGATTATTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCAGGATTTCTTGTTTCTATTGCATATATTGATCCTGGGAATTTTGAAACTGATCTACAAGCTGGAGCACAATACAAATATGGGTTGCTTTGGATCATATTGGTGGCTTCCTGTGCTGCCCTCATCATTCAATCCTTAGCAGCAAATCTAGGGGTTGTCACGGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCTAAAGTGCAAAATTTCATCCTGTGGATCCTTGCTGAAATTGCAATTGTTGCATGCGATATTCCCGAAGTTATAGGAACCGCTTTCGCATTGAATATGCTCTTCAGCATTCCGGTTTGGTGCGGCGTTCTTCTGACCGGACTTAGTACACTACTCCTTCTAGCCCTGCAGCAATTTGGGATTAGAAAGCTTGAATTCTTGATTGCATTTCTAGTTTTGACAATTGCAATTTGCTTCTTCTTGGAGCTGGGCTATGCACAGCCCGACGTCGGAGAAGTATTTTACGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGAGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCTGCACTGGTGCTCTCTAGGAAAATACCGCGATCCGTTGCTGGAATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGGTTGCCTTCTGCATTAATGTGTCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATGCCTCTGATCTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAACAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCTATAGCTCTGTTAGCATCTGGTCAGAGTTCTACCATAACTGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGCCGCCATGGATCAGAAACTTTCTAACGCGAAGTTTAGCAATTGTTCCTAGTCTGATTGTTGCAATCATTGGTGGGTCATCTGGGGCTGGAAAGTTAATCATTATCGCATCGATGATTTTGTCGTTTGAACTCCCTTTTGCCCTCATTCCTCTTCTGAAGTTTACAAGCAGCAAGACCAAGATGGGACAACACGTCAACTCCACCGCGATTACGGTACTCACATGGATCATCGGTTTTCTCATCATGGCTATAAATATATACTACCTCATAACCAGTTTCGTCCACGTACTTCTTCACAACGATCTCGAACTCGCAGCCGTTGTCTTCATAGGAATACTCGGATTTTCAGGCATGGCAATATATTTAGCTGGAATAGCCTATCTGATTTTCAAAAAGACCAAGAAGATCACTCATCTATTAGCACATACAACAGAAGAAAGTCGACGAATGGGCAATGAGCCGAGTAAGACATCGGCATATAGCGTCCCGAGCGAAAACATGCAGTTGCCTCAAACAAATAGAATGGATGATGATGTAAACTGA | 1629 | 43.16 | MAAGGSNSGQPQFLARAGGESLSHAPLIENSETDQIIVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLLLLALQQFGIRKLEFLIAFLVLTIAICFFLELGYAQPDVGEVFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVAGIKEACRFYMIESGFALLVAFCINVSVISVSGAVCNASDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLPPWIRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGQHVNSTAITVLTWIIGFLIMAINIYYLITSFVHVLLHNDLELAAVVFIGILGFSGMAIYLAGIAYLIFKKTKKITHLLAHTTEESRRMGNEPSKTSAYSVPSENMQLPQTNRMDDDVN | 542 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 44610069 | 44615624 | + | Sed0024662.1 | Sed06g2052 | 718595 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g2052 | 542 | PRINTS | Natural resistance-associated macrophage protein signature | 229 | 252 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | PRINTS | Natural resistance-associated macrophage protein signature | 367 | 384 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | PRINTS | Natural resistance-associated macrophage protein signature | 339 | 358 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | PRINTS | Natural resistance-associated macrophage protein signature | 399 | 418 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | PRINTS | Natural resistance-associated macrophage protein signature | 154 | 173 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | PRINTS | Natural resistance-associated macrophage protein signature | 126 | 152 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | PRINTS | Natural resistance-associated macrophage protein signature | 179 | 200 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | MobiDBLite | consensus disorder prediction | 515 | 542 | - | - | |
| Sed06g2052 | 542 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 31 | 499 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | Hamap | Divalent metal cation transporter MntH [mntH]. | 39 | 455 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | Pfam | Natural resistance-associated macrophage protein-like | 67 | 429 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed06g2052 | 542 | MobiDBLite | consensus disorder prediction | 507 | 542 | - | - | |
| Sed06g2052 | 542 | NCBIfam | Nramp family divalent metal transporter | 52 | 420 | - | - | |
| Sed06g2052 | 542 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 46 | 423 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0428 | Sed-Chr1:3254330 | Sed06g2052 | Sed-Chr6:44610069 | 7.50E-88 | dispersed | |
| Sed01g3098 | Sed-Chr1:42187146 | Sed06g2052 | Sed-Chr6:44610069 | 2.80E-148 | dispersed | |
| Sed05g3735 | Sed-Chr5:45266136 | Sed06g2052 | Sed-Chr6:44610069 | 3.40E-88 | dispersed | |
| Sed06g2052 | Sed-Chr6:44610069 | Sed06g2053 | Sed-Chr6:44610069 | 7.00E-302 | tandem | |
| Sed05g1398 | Sed-Chr5:27237670 | Sed06g2052 | Sed-Chr6:44610069 | 1.00E-266 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g2052 | K21398 | - | csv:101209649 | 932.169 |