Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2052 ATGGCGGCTGGAGGGTCTAATTCTGGGCAGCCACAGTTCCTTGCTAGGGCTGGAGGGGAGAGTTTATCGCACGCGCCGCTGATCGAGAACTCGGAAACTGATCAGATTATTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCAGGATTTCTTGTTTCTATTGCATATATTGATCCTGGGAATTTTGAAACTGATCTACAAGCTGGAGCACAATACAAATATGGGTTGCTTTGGATCATATTGGTGGCTTCCTGTGCTGCCCTCATCATTCAATCCTTAGCAGCAAATCTAGGGGTTGTCACGGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCTAAAGTGCAAAATTTCATCCTGTGGATCCTTGCTGAAATTGCAATTGTTGCATGCGATATTCCCGAAGTTATAGGAACCGCTTTCGCATTGAATATGCTCTTCAGCATTCCGGTTTGGTGCGGCGTTCTTCTGACCGGACTTAGTACACTACTCCTTCTAGCCCTGCAGCAATTTGGGATTAGAAAGCTTGAATTCTTGATTGCATTTCTAGTTTTGACAATTGCAATTTGCTTCTTCTTGGAGCTGGGCTATGCACAGCCCGACGTCGGAGAAGTATTTTACGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGAGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCTGCACTGGTGCTCTCTAGGAAAATACCGCGATCCGTTGCTGGAATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGGTTGCCTTCTGCATTAATGTGTCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATGCCTCTGATCTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAACAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCTATAGCTCTGTTAGCATCTGGTCAGAGTTCTACCATAACTGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGCCGCCATGGATCAGAAACTTTCTAACGCGAAGTTTAGCAATTGTTCCTAGTCTGATTGTTGCAATCATTGGTGGGTCATCTGGGGCTGGAAAGTTAATCATTATCGCATCGATGATTTTGTCGTTTGAACTCCCTTTTGCCCTCATTCCTCTTCTGAAGTTTACAAGCAGCAAGACCAAGATGGGACAACACGTCAACTCCACCGCGATTACGGTACTCACATGGATCATCGGTTTTCTCATCATGGCTATAAATATATACTACCTCATAACCAGTTTCGTCCACGTACTTCTTCACAACGATCTCGAACTCGCAGCCGTTGTCTTCATAGGAATACTCGGATTTTCAGGCATGGCAATATATTTAGCTGGAATAGCCTATCTGATTTTCAAAAAGACCAAGAAGATCACTCATCTATTAGCACATACAACAGAAGAAAGTCGACGAATGGGCAATGAGCCGAGTAAGACATCGGCATATAGCGTCCCGAGCGAAAACATGCAGTTGCCTCAAACAAATAGAATGGATGATGATGTAAACTGA 1629 43.16 MAAGGSNSGQPQFLARAGGESLSHAPLIENSETDQIIVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLLLLALQQFGIRKLEFLIAFLVLTIAICFFLELGYAQPDVGEVFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVAGIKEACRFYMIESGFALLVAFCINVSVISVSGAVCNASDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLPPWIRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGQHVNSTAITVLTWIIGFLIMAINIYYLITSFVHVLLHNDLELAAVVFIGILGFSGMAIYLAGIAYLIFKKTKKITHLLAHTTEESRRMGNEPSKTSAYSVPSENMQLPQTNRMDDDVN 542
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 44610069 44615624 + Sed0024662.1 Sed06g2052 718595
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2052 542 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 MobiDBLite consensus disorder prediction 515 542 - -
Sed06g2052 542 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 31 499 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 Hamap Divalent metal cation transporter MntH [mntH]. 39 455 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 Pfam Natural resistance-associated macrophage protein-like 67 429 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed06g2052 542 MobiDBLite consensus disorder prediction 507 542 - -
Sed06g2052 542 NCBIfam Nramp family divalent metal transporter 52 420 - -
Sed06g2052 542 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0428 Sed-Chr1:3254330 Sed06g2052 Sed-Chr6:44610069 7.50E-88 dispersed
Sed01g3098 Sed-Chr1:42187146 Sed06g2052 Sed-Chr6:44610069 2.80E-148 dispersed
Sed05g3735 Sed-Chr5:45266136 Sed06g2052 Sed-Chr6:44610069 3.40E-88 dispersed
Sed06g2052 Sed-Chr6:44610069 Sed06g2053 Sed-Chr6:44610069 7.00E-302 tandem
Sed05g1398 Sed-Chr5:27237670 Sed06g2052 Sed-Chr6:44610069 1.00E-266 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2052 K21398 - csv:101209649 932.169