Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2054 ATGCCGGCGGACACGTCAGCAATTTCCGGCGAAACCGTATGTGTCACCGGCGCCGGAGGGTTCATCGCTTCTTGGCTGGTAAAGCTCCTCCTTCAAAATGGCTACACCGTTCGAGGAACCGTTAGAAACCCAGATGATCAGAAAAATGCTCATTTGAAAGACTTAGAAGGAGCCAAAGAAAGGTTAAGTTTGTTCAGAGCTGATCTTCTGGATTACGAAAGTCTCAGAACCGCCGTCGACGGCTGCGACGGCGTTTTCCATACGGCGTCGCCGGTGACCGAGGACCCAGAAAAGGTAGAACAGGCGGTGATCGGAACAAAGAATGTGATGACGGCGGCGGCGGCGGCGGAGGTACGGCGGGTGGTTTTCACGTCGTCTATCGGAGCGGTTTACATGAACCCTAGCCGCCACCCAGATGCGGTGGTGGACGAGACATGTTGGAGTGATCTTCAATTTTGCAAGAACACTAAGAATTGGTATTGTTATGCAAAGACAATGGCAGAGCAAGCAGCATGGGAAATGGCAGAAGAAAAAGGAATGGATTTAGTGGTTGTGAACCCAATGTTGGTATTAGGACCTTTGTTGCAATCCACTGTGAATGCAAGTGTGGCTCATGTAATGAAGTATTTGACTGGCTCTGCTAAGACTTATGTCAATGCTGTTCAAGGTTATGTTGATGTTAGGGATGTTGCAAAAGCTCATCTCTTGGTTTATGAAACTCCTTCGGCCTCTGGCAGATATATGTGTGTCGAGAACATGCTTCATCGCGGAGAATTGGTCGATATTCTCACTGAATTCTTCCCCGAATACCCTCTTCCAACCAAGTGTTCAGATGAGGAAAGCCCTAGAAAAAAGCCCTACAAATTCTCTGTTGAAAAGCTTAAGGCACTTGGTATGGAGTTCACACCATTGAAGCAATGTTTATATGAAACTGTGAAGAGCTTGCAAGAAAAGGGTCATCTTCCTCTTTCTACCCAACATGTCTAA 987 47.32 MPADTSAISGETVCVTGAGGFIASWLVKLLLQNGYTVRGTVRNPDDQKNAHLKDLEGAKERLSLFRADLLDYESLRTAVDGCDGVFHTASPVTEDPEKVEQAVIGTKNVMTAAAAAEVRRVVFTSSIGAVYMNPSRHPDAVVDETCWSDLQFCKNTKNWYCYAKTMAEQAAWEMAEEKGMDLVVVNPMLVLGPLLQSTVNASVAHVMKYLTGSAKTYVNAVQGYVDVRDVAKAHLLVYETPSASGRYMCVENMLHRGELVDILTEFFPEYPLPTKCSDEESPRKKPYKFSVEKLKALGMEFTPLKQCLYETVKSLQEKGHLPLSTQHV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44617769 44624225 - Sed0001643.1 Sed06g2054 718597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2054 328 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 IPR050425 GO:0016616(PANTHER)
Sed06g2054 328 CDD FR_SDR_e 13 298 - -
Sed06g2054 328 Gene3D - 3 328 - -
Sed06g2054 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 316 IPR036291 -
Sed06g2054 328 FunFam Cinnamoyl-CoA reductase 1 4 328 - -
Sed06g2054 328 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2394 Sed-Chr1:17976407 Sed06g2054 Sed-Chr6:44617769 2.70E-75 dispersed
Sed01g3285 Sed-Chr1:61169628 Sed06g2054 Sed-Chr6:44617769 1.30E-80 dispersed
Sed06g2054 Sed-Chr6:44617769 Sed07g0750 Sed-Chr7:5602675 1.20E-144 dispersed
Sed06g2054 Sed-Chr6:44617769 Sed06g2055 Sed-Chr6:44628048 2.90E-162 tandem
Sed05g1400 Sed-Chr5:27311615 Sed06g2054 Sed-Chr6:44617769 5.90E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2054 K09753 - csv:116401668 568.54