Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2055 ATGCCGATCGATACCTCCGCAGTTTCGGGCCAAATCGTGTGCGTCACTGGCGCCGGAGGCTTCATTGCTTCTTGGCTTGTGAAGCTCCTTCTCGAAAAGGGCTACACGGTTAGAGGAACGGTTAGAAACGCTGATGACCAAAAGAATGGTCATTTGAAAGAGTTGGAAGGAGCCCAAGAGAGGTTGTCTTTGTTCAGTGCTGATCTTCTTGATTTTGATAGCCTTAAGGCTGCCATTATGGGCTGTGATGGTGTTTTCCACACCGCGTCTCCCGTGACCGATGACCCCGAAAAAGTAGAGCAAGCCATAATCGGGACAAAGAACGTCATGACCGCCGCTGCGGAAGCAAACGTTCGACGGGTGGTGTTCACTTCGTCGATTGGCACCGTTTACATGAACCCTAACCGAAGCCCAGATGCGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCAAAGACAATAGCTGAACAAACAGCATGGGAAATGGCAAAAGAAAAAGGAGTGGATTTGGTAGTTGTGAATCCAATGTTGGTATTGGGAGCTTTGTTGCAAGCTGGTGTGAATGCAAGTGTGGTTCATATAATGAAGTATTTGACTGGCTCAGCTAAGACTTATGTCAATGCTGTTCAAGGCTATGTTCATGTTAAGGATGTCGCAAAAGCTCATCTTTTGGTTTATGAAACTCCTTCGGCCTCTGGTAGATATATATGTGTCGACAGCATGCTTCATCGTGGAGAATTAATCGATATTCTCGCCGAATGCTTCCCCGAATACCCTCTTCCCACCAAGTGTTCTGATGAAGTGAATCCAAGAAAGAAACCTTACAAATTTAGTGTTGAGAAGCTAAAGTCATTGGGAATGGAGTTCACACCAATCAAACAATGTATTTTTGAAACTGTGAAGAGTTTACAAGAAAAGGGTCATCTTCCTCTTCCCTCTCAAGTTCAACAATGA 990 45.15 MPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNADDQKNGHLKELEGAQERLSLFSADLLDFDSLKAAIMGCDGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDAVVDESCWSDLDFCKNTKNWYCYAKTIAEQTAWEMAKEKGVDLVVVNPMLVLGALLQAGVNASVVHIMKYLTGSAKTYVNAVQGYVHVKDVAKAHLLVYETPSASGRYICVDSMLHRGELIDILAECFPEYPLPTKCSDEVNPRKKPYKFSVEKLKSLGMEFTPIKQCIFETVKSLQEKGHLPLPSQVQQ 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44628048 44629404 - Sed0008556.1 Sed06g2055 718598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2055 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 313 IPR050425 GO:0016616(PANTHER)
Sed06g2055 329 CDD FR_SDR_e 13 298 - -
Sed06g2055 329 Gene3D - 3 329 - -
Sed06g2055 329 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Sed06g2055 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 316 IPR036291 -
Sed06g2055 329 FunFam Cinnamoyl-CoA reductase 1 4 329 - -
Sed06g2055 329 Coils Coil 41 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1402 Sed-Chr5:27325060 Sed06g2055 Sed-Chr6:44628048 3.30E-155 dispersed
Sed05g1403 Sed-Chr5:27331511 Sed06g2055 Sed-Chr6:44628048 1.10E-172 dispersed
Sed05g1404 Sed-Chr5:27350373 Sed06g2055 Sed-Chr6:44628048 2.30E-157 dispersed
Sed06g2055 Sed-Chr6:44628048 Sed07g0750 Sed-Chr7:5602675 4.30E-145 dispersed
Sed06g2055 Sed-Chr6:44628048 Sed06g2057 Sed-Chr6:44635295 1.70E-32 proximal
Sed06g2054 Sed-Chr6:44617769 Sed06g2055 Sed-Chr6:44628048 2.90E-162 tandem
Sed06g2055 Sed-Chr6:44628048 Sed06g2056 Sed-Chr6:44632552 2.40E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2055 K09753 - csv:116401668 591.267