Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2055 | ATGCCGATCGATACCTCCGCAGTTTCGGGCCAAATCGTGTGCGTCACTGGCGCCGGAGGCTTCATTGCTTCTTGGCTTGTGAAGCTCCTTCTCGAAAAGGGCTACACGGTTAGAGGAACGGTTAGAAACGCTGATGACCAAAAGAATGGTCATTTGAAAGAGTTGGAAGGAGCCCAAGAGAGGTTGTCTTTGTTCAGTGCTGATCTTCTTGATTTTGATAGCCTTAAGGCTGCCATTATGGGCTGTGATGGTGTTTTCCACACCGCGTCTCCCGTGACCGATGACCCCGAAAAAGTAGAGCAAGCCATAATCGGGACAAAGAACGTCATGACCGCCGCTGCGGAAGCAAACGTTCGACGGGTGGTGTTCACTTCGTCGATTGGCACCGTTTACATGAACCCTAACCGAAGCCCAGATGCGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCAAAGACAATAGCTGAACAAACAGCATGGGAAATGGCAAAAGAAAAAGGAGTGGATTTGGTAGTTGTGAATCCAATGTTGGTATTGGGAGCTTTGTTGCAAGCTGGTGTGAATGCAAGTGTGGTTCATATAATGAAGTATTTGACTGGCTCAGCTAAGACTTATGTCAATGCTGTTCAAGGCTATGTTCATGTTAAGGATGTCGCAAAAGCTCATCTTTTGGTTTATGAAACTCCTTCGGCCTCTGGTAGATATATATGTGTCGACAGCATGCTTCATCGTGGAGAATTAATCGATATTCTCGCCGAATGCTTCCCCGAATACCCTCTTCCCACCAAGTGTTCTGATGAAGTGAATCCAAGAAAGAAACCTTACAAATTTAGTGTTGAGAAGCTAAAGTCATTGGGAATGGAGTTCACACCAATCAAACAATGTATTTTTGAAACTGTGAAGAGTTTACAAGAAAAGGGTCATCTTCCTCTTCCCTCTCAAGTTCAACAATGA | 990 | 45.15 | MPIDTSAVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNADDQKNGHLKELEGAQERLSLFSADLLDFDSLKAAIMGCDGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDAVVDESCWSDLDFCKNTKNWYCYAKTIAEQTAWEMAKEKGVDLVVVNPMLVLGALLQAGVNASVVHIMKYLTGSAKTYVNAVQGYVHVKDVAKAHLLVYETPSASGRYICVDSMLHRGELIDILAECFPEYPLPTKCSDEVNPRKKPYKFSVEKLKSLGMEFTPIKQCIFETVKSLQEKGHLPLPSQVQQ | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 44628048 | 44629404 | - | Sed0008556.1 | Sed06g2055 | 718598 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2055 | 329 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 12 | 313 | IPR050425 | GO:0016616(PANTHER) | |
Sed06g2055 | 329 | CDD | FR_SDR_e | 13 | 298 | - | - | |
Sed06g2055 | 329 | Gene3D | - | 3 | 329 | - | - | |
Sed06g2055 | 329 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 244 | IPR001509 | - | |
Sed06g2055 | 329 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 6 | 316 | IPR036291 | - | |
Sed06g2055 | 329 | FunFam | Cinnamoyl-CoA reductase 1 | 4 | 329 | - | - | |
Sed06g2055 | 329 | Coils | Coil | 41 | 61 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1402 | Sed-Chr5:27325060 | Sed06g2055 | Sed-Chr6:44628048 | 3.30E-155 | dispersed | |
Sed05g1403 | Sed-Chr5:27331511 | Sed06g2055 | Sed-Chr6:44628048 | 1.10E-172 | dispersed | |
Sed05g1404 | Sed-Chr5:27350373 | Sed06g2055 | Sed-Chr6:44628048 | 2.30E-157 | dispersed | |
Sed06g2055 | Sed-Chr6:44628048 | Sed07g0750 | Sed-Chr7:5602675 | 4.30E-145 | dispersed | |
Sed06g2055 | Sed-Chr6:44628048 | Sed06g2057 | Sed-Chr6:44635295 | 1.70E-32 | proximal | |
Sed06g2054 | Sed-Chr6:44617769 | Sed06g2055 | Sed-Chr6:44628048 | 2.90E-162 | tandem | |
Sed06g2055 | Sed-Chr6:44628048 | Sed06g2056 | Sed-Chr6:44632552 | 2.40E-95 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2055 | K09753 | - | csv:116401668 | 591.267 |