Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2070 ATGAACGACATCAGCTTGCAAGAGATCAAGAATGAGAACATTGATCTTGAACGCATTCCAGTTCAAGAAGTGTTTGAACAGTTGAAGTGCTCCCGGGATGGTTTGTCGTCGGAGGAGGGGCGGCAGAGGCTCGTGCTCTTTGGCCCTAATAAGCTTGAAGAGAAAAAGGAAAGTAAACTTCTGAAGTTTCTTGGGTTTATGTGGAATCCCCTTTCATGGGTTATGGAGGCTGCCGCTATCATGGCCATTGTTCTTGCCAATGGAGGGGGCAAGCCCCCAGATTGGCAAGATTTTGTGGGAATTACTACCTTGCTTCTTATCAATTCCACCATCAGCTTCATAGAAGAAAACAATGCTGGCAATGCTGCAGCTGCACTTATGGCAGGGCTTGCACCAAAAGCCAAGGTCCTTCGTGATGGAAGATGGTGTGAGGAAGAGGCTTCGATCTTAGTTCCGGGAGATGTTATCAGCATCAAGCTGGGTGATATCGTTCCTGCCGATGCTCGGTTGTTGGAAGGCGATGCTCTCAAGATTGATCAATCAGCACTTACGGGTGAGTCTTTGCCAGCTACGAAGTATGCTGGTGATGAAGTGTTTTCCGGTTCTACTGTCAAGCAAGGTGAGATCGAGGCGGTTGTCATTGCCACGGGTGTCCACACCTTTTTCGGAAAGGCGGCTCACTTGGTCGACAGCACAAATCAAGTGGGACATTTCCAAAAGGTTTTGACCTCCATTGGAAACTTCTGTATTTGCTCAATTGCCGTGGGGATGGTCATAGAGATAATCGTGATGTATCCGATTCAACGCCGTCAATATAGAGATGGGATTAACAATCTCTTGGTGCTTCTCATTGGTGGGATTCCAATTGCCATGCCAACAGTGTTGTCAGTCACAATGGCCATTGGTTCTCATAAGTTATCCGAGCAGGGTGCGATTACAAAGAGGATGACAGCCATTGAAGAGATGGCTGGAATGGATGTACTCTGCAGTGATAAGACTGGAACTCTGACCCTCAACAAGCTTACTGTTGACAAATCCATGATTGAGGTCTTCGTCAAGGATGTCGACAAGGATAATTTGATTTTGCTCGGAGCTAGAGCTTCGAGGATCGAGAACCAGGATGCTATTGATACTTGCATTGTTGGCATGCTAGGTGATCCCAAGGAGGCCAGAGAAGGCATTAAAGAGGTTCATTTCTTGCCCTTTAACCCCACGGACAAGCGTACCGCCATTACATATATCGACAACAATGGCAATTGGCATAGAGTCAGCAAAGGAGCACCGGAGCAGATTATCGAGCTCTGCAACCTCCGAGGCGAGGCCTTGAAGAAGGCTCATTCAATCATTGACAAATTTGCCGAACGTGGTCTTCGTTCTCTTGCTATTGGCAGACAGGCTGTTCCCGAAAAAACCAAAGAAAGTGATGGTGATCGATGGGAATTTGTTGGTCTCTTGCCTCTGTTTGATCCTCCCAGACATGATAGTGCAGAGACAATCCGAAGGGCACTTCATCTTGGTGTCAATGTTAAGATGATCACCGGTGATCAACTTGCCATTGGAAAGGAAACCGGCCGCAGGCTCGGAATGGGCACAAACATGTATCCATCTTCCTCACTCCTTGGACAAAGCAAGGATGAGGCAATTTCTTCTTTGCCCATTGATGAGCTTATTGAGAAGGCTGATGGATTTGCCGGCGTCTTCCCCGAACATAAATATGAAATTGTGAAAAGGCTTCAAGAGAGGAAGCATATCTGTGGGATGACAGGAGATGGTGTGAACGATGCTCCGGCATTGAAGAAGGCAGACATAGGAATTGCGGTCGACGATGCAACCGACGCTGCAAGAAGTGCTTCTGATATAGTCTTGACCGAGCCAGGACTGAGTGTCATTATTAGTGCTGTTTTGACCAGTAGAGCCATTTTTCAAAGAATGAAGAACTACACCATCTATGCAGTTTCCATCACCATCCGTATTGTCTTGGGTTTTATGCTCCTTGCACTCATTTGGAAATTTGACTTCTCCCCTTTTATGGTTCTAGTCATAGCCATTCTCAATGATGGCACCATCATGACCATCTCTAAAGACAGAGTTAAGCCCTCTCCTCTTCCCGATTCGTGGAAACTCCGCGAGATCTTTGCCACTGGCATTGTTTTGGGCTCGTACTTAGCCGTTATGACCGTTGTTTTCTTCTGGATCGCGTACACTACTGATTTCTTTACGGAGAAATTTGGTGTACATTCTATCAGAGATAGTAGGCCTGAGCTCACAGCCGCTGTGTATCTCCAAATCAGCACAGTCAGTCAGGCACTCATCTTTGTCACAAGATCTCGAAGCTGGTCATTTGTCGAACGCCCCGGTTTACTCCTCTTGTTTGCTTTCTTTGTTGCACAGTTGGTGGCTACGATCATTGCTGTGTATGCAAACTGGAAATTTGCCGATATGAAAGGGATTGGATGGAAATGGGCCGGAGTGATCTGGATCTATAGCATAATCTTCTACATTCCTCTCGACATTCTCAAGTTCATCACTCGATACGCATTGAGTGGCAAGGCTTGGGATAATATGCTCCAAAAAAGGACTGCTTTCACAACTAAGAATGACTATGGAATTGGCGAAAGAGAGGCTCAATGGGCTGCAGCGCAACGTACACTTCACGGCCTGCAGCCCCCGGAAACATCGGACCTCTTCAATGACAAAAGCAACTACAGGGAGTTGTCTGAAATCGCCGAGCAAGCTAAGAAGCGTGCTGAAGTTGCAAGGTTGAGAGAACTTCACACATTGAAGGGCCATGTTGAATCAGTGGTGAAGCTAAAGGGATTGGACATTGAAACAATCCAACAACACTACACTGTTTGA 2856 46.64 MNDISLQEIKNENIDLERIPVQEVFEQLKCSRDGLSSEEGRQRLVLFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIVLANGGGKPPDWQDFVGITTLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGRWCEEEASILVPGDVISIKLGDIVPADARLLEGDALKIDQSALTGESLPATKYAGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTSIGNFCICSIAVGMVIEIIVMYPIQRRQYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVKDVDKDNLILLGARASRIENQDAIDTCIVGMLGDPKEAREGIKEVHFLPFNPTDKRTAITYIDNNGNWHRVSKGAPEQIIELCNLRGEALKKAHSIIDKFAERGLRSLAIGRQAVPEKTKESDGDRWEFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDEAISSLPIDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGIVLGSYLAVMTVVFFWIAYTTDFFTEKFGVHSIRDSRPELTAAVYLQISTVSQALIFVTRSRSWSFVERPGLLLLFAFFVAQLVATIIAVYANWKFADMKGIGWKWAGVIWIYSIIFYIPLDILKFITRYALSGKAWDNMLQKRTAFTTKNDYGIGEREAQWAAAQRTLHGLQPPETSDLFNDKSNYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44709744 44714025 - Sed0004740.1 Sed06g2070 718613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2070 951 SFLD Haloacid Dehalogenase 311 639 - -
Sed06g2070 951 Gene3D - 132 216 - -
Sed06g2070 951 NCBIfam HAD-IC family P-type ATPase 563 673 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g2070 951 NCBIfam HAD-IC family P-type ATPase 101 349 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g2070 951 FunFam Plasma membrane ATPase 480 636 - -
Sed06g2070 951 FunFam Plasma membrane ATPase 341 488 - -
Sed06g2070 951 Pfam E1-E2 ATPase 131 308 - -
Sed06g2070 951 Coils Coil 902 922 - -
Sed06g2070 951 Gene3D - 94 815 - -
Sed06g2070 951 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Sed06g2070 951 SFLD p-type atpase 311 639 IPR044492 -
Sed06g2070 951 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Sed06g2070 951 SUPERFAMILY HAD-like 325 635 IPR036412 -
Sed06g2070 951 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Sed06g2070 951 Gene3D - 900 951 - -
Sed06g2070 951 Gene3D - 341 488 IPR023299 GO:0000166(InterPro)
Sed06g2070 951 FunFam ATPase 4 plasma membrane-type 574 815 - -
Sed06g2070 951 PANTHER CALCIUM-TRANSPORTING ATPASE 17 874 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Sed06g2070 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Sed06g2070 951 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g2070 951 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g2070 951 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g2070 951 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g2070 951 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed06g2070 951 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Sed06g2070 951 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Sed06g2070 951 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Sed06g2070 951 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Sed06g2070 951 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Sed06g2070 951 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Sed06g2070 951 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Sed06g2070 951 FunFam Plasma membrane ATPase 132 216 - -
Sed06g2070 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Sed06g2070 951 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Sed06g2070 951 Gene3D - 326 625 IPR023214 -
Sed06g2070 951 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1413 Sed-Chr5:27526908 Sed06g2070 Sed-Chr6:44709744 0.00E+00 dispersed
Sed06g2070 Sed-Chr6:44709744 Sed11g0557 Sed-Chr11:5847127 0.00E+00 dispersed
Sed12g2309 Sed-Chr12:33241248 Sed06g2070 Sed-Chr6:44709744 0.00E+00 wgd
Sed05g1412 Sed-Chr5:27526095 Sed06g2070 Sed-Chr6:44709744 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2070 K01535 - csv:101212751 1701.8