Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2136 ATGGAGAATCTCAGGGCACCATTTAAGGGTATTTTGGAAGATATCAGAGGAAGATCAGCCTGTTATAAGCAAGATTGGATTGACGGTCGACTTTCAGGATTCGGAATTTTGGCTCCAACTGCCTACATTTTTTTTGCTTCTGCACTTCCTGTCATTGCTTTCGGTGAGCAATTGAGCAGAGATACAGATGGAAGTTTGAGCACAGTCGAAACTTTGGCTTCCACAGCCATTTGTGGCATCATTCATTCAATTCTTGGTGGGCAACCTCTTTTAATTGTAGGGGTTGCAGAACCTACAATTATTATGTATACCTATTTGTACAGTTTTTGCAAAGAAAGGAAGGCTGTGGGGAGAGACCTCTATTTGGCTTGGGCAGGATGGGTTTGTGTCTGGACTTCTCTTTTGCTGTTCCTTCTTTCTATATTCAATGCTTCTAGACTAATCAACAAATTTACAAGGATTGCCGGGGAACTTTTTGGCATGTTGATCTCTGTTTTGTTCATTCAAGAAGCTATTAAGGGAGTGGTGAGCGAATTTGAAGTTCCGAAGCACGAGGATCCTAGTTTAGAGAAGTTTCATTTCAATTGGCTTTACACAAATGGAGTACTGGGAATTGTATTTACTTTTGGCGTTCTCTATACTTCTTTGAAGACCAGAAAGGCAAGATCGTGGTTGTATGGAGCAGGCTGGCTAAGGAGTTTCATTGCAGACTATGGAGTTCCCCTGATGGTTCTAGTATGGACTGCACTATCATTTAGTGTACCAAGCAAAGTCCCCTCTGGAGTTCCTAGAAGACTTCAAAGTCCTCTTGCATGGGAATCTGCTTCTCTACGCCATTGGACCGTTATCATGGACATGGGGAAGATACCTCTTGCATACATCTTTGCAGCCTTAATTCCTGCGGTGATGATTGCGGGACTTTATTTTTTTGATCATTGTGTTGCTTCTCAGATGGCACAGCAAAAAGAGTTTAATCTCAAGAACCCTTCTGCTTATCACTATGACATCCTCTTGCTGGGATTTATGACGTTGCTTTGCGGGTTAATCGGGCTTCCTCCTTCAAATGGGGTTTTGCCACAGTCCCCCATGCACACCAAGTGCCTTGCAACTCTCAGGAAACGTTTGATGCGAAAGAAGATGGTAGAAAGTGCAAAGGAATGCATAAAACGGAAAGCTAGTGAATCCGAAATTTATGGCCAAATGCAAGCTGTGTTCTTAGAAATGGAGAGTGGCCCAGTTACGAGATCAGCCGTTAATGAGCTGGAAGATTTGAAGGAGGCAGTCATGAAAGAGGAAAATAAGGATAAACTTGCAAACGATCCATTCGATCCAGAGAAGGATATTGATGCTTATCTTCCTGTTCGAGTAAACGAGCAAAGATTAAGCAATTTACTGCAATCACTTCTGGTGGCAGGATCAGTATTTGCTTTACCAGCAATAAAGATGATACCAACATCAGTTCTCTGGGGATACTTTGCCTACATGGCCATTGACAGTCTACCAGGAAACCAATTCTGGGAAAGGATTTTACTTCTCTTCGTAATGCCTAGTCGACGTTACAAGGTCCTAGAAGGCTTTCATGCTTCCTTTGTGGAGTCTGTGCCATTCAAATACATAGCCACATTCACTCTTTTTCAATTTGTATATTTCCTCATTTGTTTTGGAGTGACATGGATCCCCATAGCTGGAGTCTTGTTTCCCTTGCCTTTCTTCATTCTCATCGGCATAAGACATCGGGTCCTTCCCAAGCTACTCCAACCTCATTATTTGCAGGAGCTTGATGCGGCTGAGTACGAAGAAGTAACCGGTACCCCTAGCGTTTCTATGAAGGACAGGGCCTCTCAAAAAGTTGATAATGAAGATGGAGTTGAAATATGTGATGCTGAAATACTAGATGAGTTGACAACCCATAGAGGGGAGTTGAAGCTTAGAACGGTAAGCGCCCGTGAAGAGAGGCACTGA 1962 42.97 MENLRAPFKGILEDIRGRSACYKQDWIDGRLSGFGILAPTAYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYSFCKERKAVGRDLYLAWAGWVCVWTSLLLFLLSIFNASRLINKFTRIAGELFGMLISVLFIQEAIKGVVSEFEVPKHEDPSLEKFHFNWLYTNGVLGIVFTFGVLYTSLKTRKARSWLYGAGWLRSFIADYGVPLMVLVWTALSFSVPSKVPSGVPRRLQSPLAWESASLRHWTVIMDMGKIPLAYIFAALIPAVMIAGLYFFDHCVASQMAQQKEFNLKNPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKCLATLRKRLMRKKMVESAKECIKRKASESEIYGQMQAVFLEMESGPVTRSAVNELEDLKEAVMKEENKDKLANDPFDPEKDIDAYLPVRVNEQRLSNLLQSLLVAGSVFALPAIKMIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYKVLEGFHASFVESVPFKYIATFTLFQFVYFLICFGVTWIPIAGVLFPLPFFILIGIRHRVLPKLLQPHYLQELDAAEYEEVTGTPSVSMKDRASQKVDNEDGVEICDAEILDELTTHRGELKLRTVSAREERH 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45177084 45181528 - Sed0004868.1 Sed06g2136 718679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2136 653 Gene3D Helical hairpin bin 18 60 - -
Sed06g2136 653 Coils Coil 414 434 - -
Sed06g2136 653 PANTHER ANION EXCHANGE PROTEIN 4 637 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed06g2136 653 Pfam HCO3- transporter integral membrane domain 203 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed06g2136 653 Pfam HCO3- transporter integral membrane domain 454 596 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed06g2136 653 Pfam HCO3- transporter integral membrane domain 7 181 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1217 Sed-Chr6:35437882 Sed06g2136 Sed-Chr6:45177084 1.20E-216 dispersed
Sed06g1218 Sed-Chr6:35437882 Sed06g2136 Sed-Chr6:45177084 1.60E-186 dispersed
Sed06g2136 Sed-Chr6:45177084 Sed08g2514 Sed-Chr8:37901717 1.20E-135 dispersed
Sed05g1467 Sed-Chr5:28389525 Sed06g2136 Sed-Chr6:45177084 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2136 K24194 - csv:101210964 1132.47