Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2154 | ATGGATTTCTGGCCGGAATTTCTCGCTAAAAGTTGGGGAAAAGAGTTCGTCGCCGGCGGAATCGGCGGCGTCGCCGGCATCGTCTCCGGCTACCCACTCGACACCCTTCGCATTCGACAACAAAGCTCCACCGCCGGCTCCGCCCTCACCGTCCTACGTGGCATCATGTCCAACGGCGGCCCCGCCGCCCTCTACCGGGGAATGGCCGCCCCACTCGCCTCCGTAACATTTCAGAACGCCATTGTTTTTCAAACCAACGCCGTTCTCTGCAGAGCATTCGACCCGGCGGCGAGCGAAACCCGACCGCCATCGTACAAGGCGGTGGCATTAGGCGGGTTCGGTACCGGAGCACTACAGAGCCTAATTCTAACCCCTGTCGAACTCGTCAAAATCCGTCTCCAACTCCAAGAATCACCCAAATCCCCAAATTCAAACCCGGGTTCGAATCGGGTCGGGCCGATGCGGGTCGCGAAGAACATTTACAAATCAGAAGGATACAGAGGATTATACAGAGGATTAACAATCACAATGCTCAGAGACGCTCCATCACACTGTTTTTACTTTTTAACCTACGAATTCATGAGAGAAAAGCTTCATCCCGGCTGTAGAAACTCCGGCCAAGAATCGTTGAAAACGATGCTCGTCGCCGGCGGCCTCGCCGGCGTTGCTAGCTGGGTTTGCTGCTACCCGTTGGATGTTGTGAAAACCCGGCTTCAAGCTCAGTCCAAAATCTCGTTTCAAAAGTATAATGGGATTATGGATTGTTTTCAAAAATCCGTTAAGGAAGAAGGGTATAGCGTTTTGTGGCGTGGATTGGGAACCGCCGTTGCGAGAGCTTTTCTTGTTAATGGCGCCATTTTTACTGCTTATGAACTCAGCTTGAGATGTCTGTTCAATAATGGCGGATTTCATACTGAAAATATAATTTGA | 930 | 51.72 | MDFWPEFLAKSWGKEFVAGGIGGVAGIVSGYPLDTLRIRQQSSTAGSALTVLRGIMSNGGPAALYRGMAAPLASVTFQNAIVFQTNAVLCRAFDPAASETRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQESPKSPNSNPGSNRVGPMRVAKNIYKSEGYRGLYRGLTITMLRDAPSHCFYFLTYEFMREKLHPGCRNSGQESLKTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKISFQKYNGIMDCFQKSVKEEGYSVLWRGLGTAVARAFLVNGAIFTAYELSLRCLFNNGGFHTENII | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 45337744 | 45342046 | + | Sed0001190.1 | Sed06g2154 | 718697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2154 | 309 | Gene3D | Mitochondrial carrier domain | 13 | 301 | IPR023395 | - | |
Sed06g2154 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 10 | 92 | IPR018108 | - | |
Sed06g2154 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 103 | 197 | IPR018108 | - | |
Sed06g2154 | 309 | Pfam | Mitochondrial carrier protein | 10 | 87 | IPR018108 | - | |
Sed06g2154 | 309 | Pfam | Mitochondrial carrier protein | 212 | 299 | IPR018108 | - | |
Sed06g2154 | 309 | Pfam | Mitochondrial carrier protein | 109 | 198 | IPR018108 | - | |
Sed06g2154 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 208 | 296 | IPR018108 | - | |
Sed06g2154 | 309 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 9 | 297 | IPR050567 | GO:0006810(PANTHER)|GO:0022857(PANTHER) | |
Sed06g2154 | 309 | SUPERFAMILY | Mitochondrial carrier | 11 | 291 | IPR023395 | - | |
Sed06g2154 | 309 | PRINTS | Mitochondrial carrier protein signature | 170 | 188 | IPR002067 | GO:0055085(InterPro) | |
Sed06g2154 | 309 | PRINTS | Mitochondrial carrier protein signature | 15 | 28 | IPR002067 | GO:0055085(InterPro) | |
Sed06g2154 | 309 | PRINTS | Mitochondrial carrier protein signature | 118 | 136 | IPR002067 | GO:0055085(InterPro) | |
Sed06g2154 | 309 | PRINTS | Mitochondrial carrier protein signature | 217 | 239 | IPR002067 | GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0199 | Sed-Chr2:33928847 | Sed06g2154 | Sed-Chr6:45337744 | 9.90E-27 | dispersed | |
Sed06g2154 | Sed-Chr6:45337744 | Sed09g1567 | Sed-Chr9:39287303 | 2.00E-88 | dispersed | |
Sed06g2154 | Sed-Chr6:45337744 | Sed07g0813 | Sed-Chr7:6006815 | 5.00E-10 | wgd | |
Sed06g2154 | Sed-Chr6:45337744 | Sed07g1470 | Sed-Chr7:11345258 | 1.60E-109 | wgd | |
Sed06g2154 | Sed-Chr6:45337744 | Sed09g1566 | Sed-Chr9:39287092 | 2.20E-119 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2154 | K15109 | - | csv:101222749 | 540.806 |