Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2154 ATGGATTTCTGGCCGGAATTTCTCGCTAAAAGTTGGGGAAAAGAGTTCGTCGCCGGCGGAATCGGCGGCGTCGCCGGCATCGTCTCCGGCTACCCACTCGACACCCTTCGCATTCGACAACAAAGCTCCACCGCCGGCTCCGCCCTCACCGTCCTACGTGGCATCATGTCCAACGGCGGCCCCGCCGCCCTCTACCGGGGAATGGCCGCCCCACTCGCCTCCGTAACATTTCAGAACGCCATTGTTTTTCAAACCAACGCCGTTCTCTGCAGAGCATTCGACCCGGCGGCGAGCGAAACCCGACCGCCATCGTACAAGGCGGTGGCATTAGGCGGGTTCGGTACCGGAGCACTACAGAGCCTAATTCTAACCCCTGTCGAACTCGTCAAAATCCGTCTCCAACTCCAAGAATCACCCAAATCCCCAAATTCAAACCCGGGTTCGAATCGGGTCGGGCCGATGCGGGTCGCGAAGAACATTTACAAATCAGAAGGATACAGAGGATTATACAGAGGATTAACAATCACAATGCTCAGAGACGCTCCATCACACTGTTTTTACTTTTTAACCTACGAATTCATGAGAGAAAAGCTTCATCCCGGCTGTAGAAACTCCGGCCAAGAATCGTTGAAAACGATGCTCGTCGCCGGCGGCCTCGCCGGCGTTGCTAGCTGGGTTTGCTGCTACCCGTTGGATGTTGTGAAAACCCGGCTTCAAGCTCAGTCCAAAATCTCGTTTCAAAAGTATAATGGGATTATGGATTGTTTTCAAAAATCCGTTAAGGAAGAAGGGTATAGCGTTTTGTGGCGTGGATTGGGAACCGCCGTTGCGAGAGCTTTTCTTGTTAATGGCGCCATTTTTACTGCTTATGAACTCAGCTTGAGATGTCTGTTCAATAATGGCGGATTTCATACTGAAAATATAATTTGA 930 51.72 MDFWPEFLAKSWGKEFVAGGIGGVAGIVSGYPLDTLRIRQQSSTAGSALTVLRGIMSNGGPAALYRGMAAPLASVTFQNAIVFQTNAVLCRAFDPAASETRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQESPKSPNSNPGSNRVGPMRVAKNIYKSEGYRGLYRGLTITMLRDAPSHCFYFLTYEFMREKLHPGCRNSGQESLKTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKISFQKYNGIMDCFQKSVKEEGYSVLWRGLGTAVARAFLVNGAIFTAYELSLRCLFNNGGFHTENII 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45337744 45342046 + Sed0001190.1 Sed06g2154 718697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2154 309 Gene3D Mitochondrial carrier domain 13 301 IPR023395 -
Sed06g2154 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Sed06g2154 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Sed06g2154 309 Pfam Mitochondrial carrier protein 10 87 IPR018108 -
Sed06g2154 309 Pfam Mitochondrial carrier protein 212 299 IPR018108 -
Sed06g2154 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Sed06g2154 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Sed06g2154 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 9 297 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Sed06g2154 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Sed06g2154 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085(InterPro)
Sed06g2154 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Sed06g2154 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
Sed06g2154 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0199 Sed-Chr2:33928847 Sed06g2154 Sed-Chr6:45337744 9.90E-27 dispersed
Sed06g2154 Sed-Chr6:45337744 Sed09g1567 Sed-Chr9:39287303 2.00E-88 dispersed
Sed06g2154 Sed-Chr6:45337744 Sed07g0813 Sed-Chr7:6006815 5.00E-10 wgd
Sed06g2154 Sed-Chr6:45337744 Sed07g1470 Sed-Chr7:11345258 1.60E-109 wgd
Sed06g2154 Sed-Chr6:45337744 Sed09g1566 Sed-Chr9:39287092 2.20E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2154 K15109 - csv:101222749 540.806