Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2158 ATGGGCGCCGACATGTCGAACAATAATCGCCTCGCTTTCACGAAAGACTTCTTCTCCTCTCCCGCTCTCTCTCTCACCCTTGCGGGGATTTTTCGCCGCGGTGAAGTGACGGGGAAGGGGGATGTGGAGATGGAGGAGGTGGATGATGCAGCGGAGGTGAGTAGTGAGAACTCGGGACCGGTGAGGTCGAGATCGGAGGATGATTTCGATGGTGGGGGAGTGCATGAGGAGAATGAAGATGGGGAGCATGGATGCCATAAAAAGAGAAGGAAGAAATATCATCGCCATACTACCGAGCAAATCAAAGAAATGGAGGCGCTATTTAAAGAATCTCCACACCCGGATGAGAAGCAAAGACAACAGCTTAGCAAGAGATTAGGGCTTTCACCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCCATTCAAGAGCGCCATGAAAACACGTTGTTGAAAGCTGAAATGGAGAAACTTAGAGAAGAAAATAAAGCCATGAGAGAAATTACAAAGAAGAAAATTGGTTGTCAAAATTGTGGCACTGCCGACGCCGGCGATCAAGACCACGCCGCTTTCACAACCACCGAGCAATTGCGTATTAAAAATGCTAAGCTCAAAGCTGAGGTTGAAAAACTACGAGCGGCATTGGGAAAACACCCACAAGCAACAACCTCTTCTTCATACTCATCCGAAAACAACCAAGTTCAAACAAGCCGAAGCTGCTTAGATTTTTACACTGAAATTTTCAGGTTAGAAAAGTCAAGGATCATGGAGAAGCTTCATCAAGCTCTCGAAGAGCTCGAGACAATGGCTGCCGCAGGCGAGCCACTTTGGGTCCGTAGCATCGAGACGGGAAGAGAGATTCTAAACTACGACGAGTACTTGAAAACATTCCACGTCAAGAATTCGAATACTTGTTGGCTCAAGAGACACATTGAGGCCTCCCGAGACACGACCGTCGTCTTCATGGAGCCCTCGAGGTTGGTTCAAAGCTTCATGAATGAGAATCAATGGAAGGAGATGTTTCCTTTTATGATCTCAAAGGCAGCTACAATTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATGGGGCGGTTCAATTGATGTTTGCAGAGGTGCAAATGCTAACACCATTGGTACCCACTAGAGAAATGTATTTCATACGCTATTGCAAGCAGCTTGACGCTGAACAATGGGCGATCGTTGATGTTTCGATTGAAAATGTCGAAGATAGTAATATCGATGCATCATTAGTGAAATATAGAAAACGTCCTTCTGGTTGCATCATCAAGGATGAATATAATGGCCATTGCAAGGTAACAATGGTGGAGCATTTGGAGTGTGAGAAAAGGAAAGTTCACAACTTGTACCGGAGCTTAGTGAACAATGGCACTGCCTTTGGAGCAAGACATTGGATGGCAACACTTCAACTCCAATGTGAACGCCTAGCTTTCTTCATGGCCACTAACATCCCTATGAAAGACTCAACTGGAGTTGCAACACTAGCTGGAAGAAAAAGCACTTTGAAGTTAGCACAAAGAATGACTTCAAGTTTCTGCCAAGTAGTAACAGCTTCAAGTTACCAAACATGGACCAAAGTTGCAACCAAAACAGGAGAAGACATTAGGGTTTCCTCAAGGAAGAATCTAACTGACCCTGGTGAACCCATTGGAGTTATTTTATGCGCAGTTTCTTCGCTATGGTTGCCCGTTTCTCCCTATACTCTCTTCGGTTTCTTGAGGGACGAAGCTCGTAGAAACGAGTGGGATGCTATGTTTGGAGGGGATAAAGCTCAGTCGATTGCGAATTTGGCAAAAGGACAAGATCGAGGAAACTCAGTAACCATTCAAACAATTGGATCAAATGAGAGCAGCAACAGCATGTGGATTCTCCAAGACAGCTCCACAAACTCGTCGGAATCAATGGTGGTCTACTCCGGCGTAGACATTTCCGGCATGCAGTCGGTAATGACCGGCTGCGACTCCGGTAGCCTTGCCGTCCTCCCCTCCGGCTTTTCCATTCTACCGGACGGTGCCGAGTCCCGGCCTCTACTCATCACTCACCGGAAAGACCACAAGTCCGCCGACACTCACGGCGGCGCTCTGCTGACCGCTTCCGTACAAATTCTGACCAACGCCTCTCCCTCCGCAAAACCGACGGCGGAGTCCGTCGAGTACGTTAAAAACGTGGTTTCTTGTATGATCAAAAATATCAGAAGCAGCATGTGCTGTGAGGATGATTATTGA 2262 46.73 MGADMSNNNRLAFTKDFFSSPALSLTLAGIFRRGEVTGKGDVEMEEVDDAAEVSSENSGPVRSRSEDDFDGGGVHEENEDGEHGCHKKRRKKYHRHTTEQIKEMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREITKKKIGCQNCGTADAGDQDHAAFTTTEQLRIKNAKLKAEVEKLRAALGKHPQATTSSSYSSENNQVQTSRSCLDFYTEIFRLEKSRIMEKLHQALEELETMAAAGEPLWVRSIETGREILNYDEYLKTFHVKNSNTCWLKRHIEASRDTTVVFMEPSRLVQSFMNENQWKEMFPFMISKAATIDVICNGEVANWNGAVQLMFAEVQMLTPLVPTREMYFIRYCKQLDAEQWAIVDVSIENVEDSNIDASLVKYRKRPSGCIIKDEYNGHCKVTMVEHLECEKRKVHNLYRSLVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMTSSFCQVVTASSYQTWTKVATKTGEDIRVSSRKNLTDPGEPIGVILCAVSSLWLPVSPYTLFGFLRDEARRNEWDAMFGGDKAQSIANLAKGQDRGNSVTIQTIGSNESSNSMWILQDSSTNSSESMVVYSGVDISGMQSVMTGCDSGSLAVLPSGFSILPDGAESRPLLITHRKDHKSADTHGGALLTASVQILTNASPSAKPTAESVEYVKNVVSCMIKNIRSSMCCEDDY 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45362581 45372654 - Sed0011596.1 Sed06g2158 718701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2158 753 Gene3D - 75 162 - -
Sed06g2158 753 CDD homeodomain 90 145 IPR001356 GO:0003677(InterPro)
Sed06g2158 753 MobiDBLite consensus disorder prediction 61 86 - -
Sed06g2158 753 Coils Coil 199 219 - -
Sed06g2158 753 Pfam Homeodomain 90 145 IPR001356 GO:0003677(InterPro)
Sed06g2158 753 SMART HOX_1 89 151 IPR001356 GO:0003677(InterPro)
Sed06g2158 753 Pfam START domain 266 487 IPR002913 GO:0008289(InterPro)
Sed06g2158 753 Coils Coil 146 176 - -
Sed06g2158 753 MobiDBLite consensus disorder prediction 46 97 - -
Sed06g2158 753 Gene3D - 280 487 IPR023393 -
Sed06g2158 753 CDD START_ArGLABRA2_like 257 486 - -
Sed06g2158 753 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed06g2158 753 SUPERFAMILY Bet v1-like 510 685 - -
Sed06g2158 753 SUPERFAMILY Homeodomain-like 77 148 IPR009057 -
Sed06g2158 753 FunFam Homeobox-leucine zipper protein HDG1 75 163 - -
Sed06g2158 753 SUPERFAMILY Bet v1-like 256 488 - -
Sed06g2158 753 ProSiteProfiles START domain profile. 253 490 IPR002913 GO:0008289(InterPro)
Sed06g2158 753 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 749 IPR042160 -
Sed06g2158 753 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677(InterPro)
Sed06g2158 753 FunFam Homeobox-leucine zipper protein GLABRA 2 262 486 - -
Sed06g2158 753 SMART START_1 262 487 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2158 Sed-Chr6:45362581 Sed09g1577 Sed-Chr9:39336227 2.70E-187 dispersed
Sed06g2158 Sed-Chr6:45362581 Sed09g0079 Sed-Chr9:618782 1.70E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38937 PF01852 START 4.30E-54 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2158 K09338 - csv:101221341 1203.73