Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2170 ATGGAGTTGCCGGACTTTCACGTCGGCGCCTACTACGCCGCCGGGCCCGCTCCATTTTCGCCGGAAAATCATAAATCTGCCGCCGATCCGTTCGCCGTCGATGAATATTTGTTGGATTTCTCAAATGACGATGCAACGATAACTACCCGCTTCTTCGACAATGTCGCCGGAAATTGCAGCGATTCGTCGACCGTCACCGCGATCGAGAGCTGCAACTCGTCGGTCTCCGGCGGCGATAACCAGTTTTCAAGGAATTTCGGCAACGGAAGCTTCTCTGAACCTCAATTCTCGAGCGAACTCTGTATTCCGTGCGACGATTTGGCTGAACTCGAATGGCTATCGAATTTCGTGGAAGATTCATTTTCAACCGACGAAATTCAGAACAGTTTTCCGGCGATTCCCTATCCCACTGGCACGGCGGCGACACCAGAAACGCCGTCTTCCGCCGGAGCTCACACGGGCAAGGCAAGAAGCAAACGCTCACGCGCTTCCCCCTGCGACTGGTCCACGCGCCTCCTCCAGGCTGCGTTGCCGGCGAAGTCAGAACCGACGTCGCCGACGGGCCGGAAATGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACGGGGCCGATGGGTCCGAAAACGCTGTGCAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGGTTGGTACCCGAGTACCGACCTGCCGCGAGTCCGACATTTGTGTCGACGCGGCACTCCAATTCTCACCGGAAAGTGATGGAGCTCCGGCGACAGAGGGAGGTGCAATATCAAGAACAGTATTTAAGTCAAAGTTCGATATTCGGCAGATCCAACGGCTGCGATGAGTACTTGATCCACCTTTCCAACGGCGGAGATTTCAGGCACATGCTGTAG 885 56.72 MELPDFHVGAYYAAGPAPFSPENHKSAADPFAVDEYLLDFSNDDATITTRFFDNVAGNCSDSSTVTAIESCNSSVSGGDNQFSRNFGNGSFSEPQFSSELCIPCDDLAELEWLSNFVEDSFSTDEIQNSFPAIPYPTGTAATPETPSSAGAHTGKARSKRSRASPCDWSTRLLQAALPAKSEPTSPTGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTRHSNSHRKVMELRRQREVQYQEQYLSQSSIFGRSNGCDEYLIHLSNGGDFRHML 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45449494 45450776 + Sed0011351.1 Sed06g2170 718713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2170 294 MobiDBLite consensus disorder prediction 137 164 - -
Sed06g2170 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 249 - -
Sed06g2170 294 MobiDBLite consensus disorder prediction 137 154 - -
Sed06g2170 294 PIRSF Txn_fac_GATA_plant 179 275 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Sed06g2170 294 PIRSF Txn_fac_GATA_plant 16 186 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Sed06g2170 294 PANTHER GATA TRANSCRIPTION FACTOR 31 257 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Sed06g2170 294 SMART GATA_3 185 235 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g2170 294 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g2170 294 FunFam GATA transcription factor 170 267 - -
Sed06g2170 294 Pfam GATA zinc finger 191 225 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g2170 294 CDD ZnF_GATA 190 237 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g2170 294 Gene3D - 186 265 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed06g2170 294 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2170 Sed-Chr6:45449494 Sed12g1394 Sed-Chr12:11294662 5.10E-57 dispersed
Sed05g1505 Sed-Chr5:28732694 Sed06g2170 Sed-Chr6:45449494 2.90E-60 wgd
Sed06g2170 Sed-Chr6:45449494 Sed07g1431 Sed-Chr7:11063571 1.40E-91 wgd
Sed06g2170 Sed-Chr6:45449494 Sed07g1431 Sed-Chr7:11063571 1.40E-91 wgd
Sed06g2170 Sed-Chr6:45449494 Sed09g1604 Sed-Chr9:39528717 2.60E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38938 PF00320 GATA 1.60E-14 CL0167 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2170 - - - 0.0