Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2170 ATGGAGTTGCCGGACTTTCACGTCGGCGCCTACTACGCCGCCGGGCCCGCTCCATTTTCGCCGGAAAATCATAAATCTGCCGCCGATCCGTTCGCCGTCGATGAATATTTGTTGGATTTCTCAAATGACGATGCAACGATAACTACCCGCTTCTTCGACAATGTCGCCGGAAATTGCAGCGATTCGTCGACCGTCACCGCGATCGAGAGCTGCAACTCGTCGGTCTCCGGCGGCGATAACCAGTTTTCAAGGAATTTCGGCAACGGAAGCTTCTCTGAACCTCAATTCTCGAGCGAACTCTGTATTCCGTGCGACGATTTGGCTGAACTCGAATGGCTATCGAATTTCGTGGAAGATTCATTTTCAACCGACGAAATTCAGAACAGTTTTCCGGCGATTCCCTATCCCACTGGCACGGCGGCGACACCAGAAACGCCGTCTTCCGCCGGAGCTCACACGGGCAAGGCAAGAAGCAAACGCTCACGCGCTTCCCCCTGCGACTGGTCCACGCGCCTCCTCCAGGCTGCGTTGCCGGCGAAGTCAGAACCGACGTCGCCGACGGGCCGGAAATGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACGGGGCCGATGGGTCCGAAAACGCTGTGCAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGGTTGGTACCCGAGTACCGACCTGCCGCGAGTCCGACATTTGTGTCGACGCGGCACTCCAATTCTCACCGGAAAGTGATGGAGCTCCGGCGACAGAGGGAGGTGCAATATCAAGAACAGTATTTAAGTCAAAGTTCGATATTCGGCAGATCCAACGGCTGCGATGAGTACTTGATCCACCTTTCCAACGGCGGAGATTTCAGGCACATGCTGTAG 885 56.72 MELPDFHVGAYYAAGPAPFSPENHKSAADPFAVDEYLLDFSNDDATITTRFFDNVAGNCSDSSTVTAIESCNSSVSGGDNQFSRNFGNGSFSEPQFSSELCIPCDDLAELEWLSNFVEDSFSTDEIQNSFPAIPYPTGTAATPETPSSAGAHTGKARSKRSRASPCDWSTRLLQAALPAKSEPTSPTGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTRHSNSHRKVMELRRQREVQYQEQYLSQSSIFGRSNGCDEYLIHLSNGGDFRHML 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45449494 45450776 + Sed0011351.1 Sed06g2170 718713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2170 294 MobiDBLite consensus disorder prediction 137 164 - -
Sed06g2170 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 249 - -
Sed06g2170 294 MobiDBLite consensus disorder prediction 137 154 - -
Sed06g2170 294 PIRSF Txn_fac_GATA_plant 179 275 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Sed06g2170 294 PIRSF Txn_fac_GATA_plant 16 186 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Sed06g2170 294 PANTHER GATA TRANSCRIPTION FACTOR 31 257 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Sed06g2170 294 SMART GATA_3 185 235 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g2170 294 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g2170 294 FunFam GATA transcription factor 170 267 - -
Sed06g2170 294 Pfam GATA zinc finger 191 225 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g2170 294 CDD ZnF_GATA 190 237 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed06g2170 294 Gene3D - 186 265 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed06g2170 294 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2170 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2170 Sed-Chr6:45449494 Sed12g1394 Sed-Chr12:11294662 5.10E-57 dispersed
Sed05g1505 Sed-Chr5:28732694 Sed06g2170 Sed-Chr6:45449494 2.90E-60 wgd
Sed06g2170 Sed-Chr6:45449494 Sed07g1431 Sed-Chr7:11063571 1.40E-91 wgd
Sed06g2170 Sed-Chr6:45449494 Sed07g1431 Sed-Chr7:11063571 1.40E-91 wgd
Sed06g2170 Sed-Chr6:45449494 Sed09g1604 Sed-Chr9:39528717 2.60E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g303 Blo05g00081 Blo06g00706 . Bda10g00830 Bpe06g00746 Bpe10g00664 . . Cmo08g00689 Cmo17g00746 Cma01g00100 Cma14g01295 Car01g00085 Car14g01147 Sed06g2170 Cpe12g00660 Cpe17g00539 Bhi01g03395 Tan04g2676 Cmetu04g3117 Lac11g0763 Hepe02g1433 . . Cla07g01259 Cam07g1241 Cec07g1441 Cco07g1399 Clacu07g1325 Cmu07g1301 Cre07g1683 Cone20ag1264 Cone17ag0146 Cone16ag0712 Cone2ag0319 Lsi02g02999 Csa07g02450 Chy04g00936 Cme01g02907 . . . . . . . Bma15g00355 . Cmo01g00103 Cmo14g01329 Cma08g00726 Cma17g00778 Car08g00614 Car17g00719 Cpe02g01690 Cpe03g01098 Bhi09g00450 . . . . . . Cla09g00007 Cam09g0008 Cec09g0008 Cco09g0007 Clacu09g0009 . Cre09g0006 Lsi07g00519 . . Cme04g01124
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1471 . 71 348 C2C2-Gata Transcription Factor Family AT5G25830 53.9 1.2e-67 254.6
Sed12g0790 . 3 149 C2C2-Gata Transcription Factor Family AT3G06740 58.4 6.7e-37 151.4
Sed06g2170 . 96 263 C2C2-Gata Transcription Factor Family AT2G45050 51.3 2.2e-43 173.7
Sed07g1682 . 103 275 C2C2-Gata Transcription Factor Family AT4G36240 50.3 3.0e-39 159.8
Sed04g1664 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.8 2.3e-137 486.9
Sed01g4052 . 1 513 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.4e-129 461.1
Sed05g1020 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1021 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1020 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
Sed05g1021 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013047 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38938 PF00320 GATA 1.60E-14 CL0167 Sed TF