Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2179 ATGAATCCTGTACGAATTTGTACTTTGTTCTTCTTTTTTCTATGCGTTACCGTTGTTCTTCAAGATCATTCTCTCTGTTTTTCTTATCCCATGCCCTTAAATTGTACGGACACAACCCGTTTATGCACATCGTTTTTGGCTTTCAAGCCTCAATCGAATCAAACCCTTTCTGTGATTCAGAGTATGTTCGATGTATTGCCTGAAGATGTTACAATCGAGGGCAATGGTTGGGATTATGTGTTCATAAGGAAGAATTGTTCATGTGCCTCTGGATTGAAGAAATACATCACTAATACCACTTTTACCATCAAATCCAATAGGGGTTTTGTGTATGATATGGTTATGGAAGCCTATGATGGGCTTGCTTTGGTTCCGAACTCGACTCGAACGGCGAGGAATGGTGCTGTTGTGTCTTTGAGGCTGTTATGTGCCTGTTCTAGTGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGTGATACCATCGAGTCTTTGGCTAGCAGATTTGGGGTTAGTATGGATAGCATTGAGTCTGTGAATGGAATTGAAAATCCTAGCAATGTTTCTGTTGGTGCTTTGTATTATATCCCCTTGAATTCGGTTCCTGGTGATCCTTATCCACTGGAGAGTGAGATTTCTCCTGCTCCTGCTTTTACTCCAGCTCCATCTTATTCTATGAGCAATTTCTCAAAGGATAGTGCGGATAACAACAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTATTAGGCATAGTAGGTTATGCTTGCTGTAGGTGGTTGAAATGCTTTTCTAGATCAAAAAGTAGCCACTCCAAAGAACCCGGTGGCAAGGTTTCGCACAAGTTCCATATTCTTGGGAAGTCGAGTTTCTGTTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCAAATTGGAAACAAGCTAGCGCGGAATCTAGTGATAACCAGGGTGCAATTCCAAAAGCTATTGGGAGCAATATATTTGATGTAGACAAACCTGTAGTTTTCTCATGCGAAGAAATCTTTTCCTCAACCGATGGTTTCTCCGATGCAAGTCTACTTGGCCATGGAACCTATGGTTCAGTGTATTATGGCATCCTGCGTGACCAGGAAGTTGCTATGAAAAGAATGACTGCAACGAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCAAACTTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGAAGAGCTCTTTCTTATTTATGAATATGCTCAAAAAGGTCCACTCAAAAGTCATTTACATGATCCTCTGAACAAAGGCCATACATCGCTCTCTTGGATTATGAGACTCCAAATTGCTTTGGATGCAGCGAGAGGTCTCGAATACATTCATGAGCATACTAAACCTCATTATGTCCATAGAGATATCAAGACAAGCAACATCTTGCTTGATGGTTCTTTTAGGGCAAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACAAATGAGGGTGAAGCTTCAGTAACCAAAGTGGTCGGTACATATGGTTATCTCGCTCCCGAATATTTGAGTAATGGTCTTGCTACAACCAAAAGTGATGTGTACGCTTACGGTGTCGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCAATTATACGAACTGAGGGCACGACTACGAAAAATTCTGAAAGACGTTCACTAGCATCCATTATGTTAGCCGTTCTTCGGAACACGCCCGATCCTATGAATATGGCAAGTTTGAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTCAAGGTGGCCATGTTGGCAAAGCAGTGTGTGGACGAGGATCCCATCTTACGACCCGACATGAAGCAAATCGTAATATCCTTGTCGCAAATCCTACTCTCTTCGATCGAGTGGGAGGCAACTCTAGCTGGTAACAGCCAAGTTTTTAGTGGCCTTGTCCAAGGAAGATAG 2013 41.68 MNPVRICTLFFFFLCVTVVLQDHSLCFSYPMPLNCTDTTRLCTSFLAFKPQSNQTLSVIQSMFDVLPEDVTIEGNGWDYVFIRKNCSCASGLKKYITNTTFTIKSNRGFVYDMVMEAYDGLALVPNSTRTARNGAVVSLRLLCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPSNVSVGALYYIPLNSVPGDPYPLESEISPAPAFTPAPSYSMSNFSKDSADNNKRHPPYIWIVGSLGIILVLILLGIVGYACCRWLKCFSRSKSSHSKEPGGKVSHKFHILGKSSFCCASGRYICCSSANWKQASAESSDNQGAIPKAIGSNIFDVDKPVVFSCEEIFSSTDGFSDASLLGHGTYGSVYYGILRDQEVAMKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEYAQKGPLKSHLHDPLNKGHTSLSWIMRLQIALDAARGLEYIHEHTKPHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEASVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELISGKEAIIRTEGTTTKNSERRSLASIMLAVLRNTPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDPILRPDMKQIVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45543130 45548425 - Sed0025043.1 Sed06g2179 718722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2179 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 11 659 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Sed06g2179 670 SMART serkin_6 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2179 670 FunFam PTI1-like tyrosine-protein kinase 3 432 656 - -
Sed06g2179 670 Pfam LysM domain 158 193 IPR018392 -
Sed06g2179 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2179 670 SUPERFAMILY LysM domain 154 199 IPR036779 -
Sed06g2179 670 ProSiteProfiles LysM domain profile. 154 198 IPR018392 -
Sed06g2179 670 SMART LysM_2 155 199 IPR018392 -
Sed06g2179 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Sed06g2179 670 FunFam Kinase family protein 334 431 - -
Sed06g2179 670 Gene3D Phosphorylase Kinase; domain 1 334 431 - -
Sed06g2179 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524(InterPro)
Sed06g2179 670 Gene3D LysM domain 151 204 IPR036779 -
Sed06g2179 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2179 670 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
Sed06g2179 670 Pfam Protein tyrosine and serine/threonine kinase 365 641 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2030 Sed-Chr6:44392861 Sed06g2179 Sed-Chr6:45543130 2.40E-34 dispersed
Sed06g2179 Sed-Chr6:45543130 Sed11g1157 Sed-Chr11:27498467 1.50E-56 dispersed
Sed07g2255 Sed-Chr7:38449298 Sed06g2179 Sed-Chr6:45543130 2.80E-35 dispersed
Sed02g1364 Sed-Chr2:49934884 Sed06g2179 Sed-Chr6:45543130 2.10E-60 transposed
Sed05g2043 Sed-Chr5:33662228 Sed06g2179 Sed-Chr6:45543130 1.40E-77 transposed
Sed06g1667 Sed-Chr6:41434128 Sed06g2179 Sed-Chr6:45543130 9.90E-97 transposed
Sed14g0001 Sed-Chr14:105963 Sed06g2179 Sed-Chr6:45543130 4.10E-16 transposed
Sed06g2179 Sed-Chr6:45543130 Sed07g1373 Sed-Chr7:10417057 1.70E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79401 PF07714 PK_Tyr_Ser-Thr 9.70E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2179 - - - 0.0