Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2183 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCCAACACCTCAAAGCTGCTGCTATAATCGGTAACGACGGTGCTGTTTGGGCTCAGAGCGCCGATTTCCCTAAGTTTAAGCCAGAAGAGATCTCTGCCATTACAAAGGATTTTGATGAGCCTGGTTCTCTTGCACCGACTGGTTTACACCTTGCAGGATCAAAGTACATGGTTATCCAAGGGGAACCTGGAGCTGTTATCCGTGGAAAGAAGGGGACTTCTGGGATCACTGTAAAGAAAACAACCCAAGCACTCATTTTTGGTTTATATGATGAACCAATGACACCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCCTGTAA 396 45.2 MSWQSYIDDQLMYEVDGQHLKAAAIIGNDGAVWAQSADFPKFKPEEISAITKDFDEPGSLAPTGLHLAGSKYMVIQGEPGAVIRGKKGTSGITVKKTTQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45612222 45614656 - Sed0025359.1 Sed06g2183 718726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2183 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Sed06g2183 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Sed06g2183 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Sed06g2183 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Sed06g2183 131 FunFam Profilin 1 131 - -
Sed06g2183 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Sed06g2183 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2183 Sed-Chr6:45612222 Sed11g0035 Sed-Chr11:334700 2.10E-58 dispersed
Sed06g2183 Sed-Chr6:45612222 Sed07g1414 Sed-Chr7:10840870 3.00E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2183 K05759 - csv:101218089 252.677