Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2184 ATGGGTTGTGTTCTTGGCAAGTGTTGCAATCCCGGCCGCTATGCGCCGCCGTCGTCCGGCGGCGGTATAGCACAATTCTATGATGGGCCGCCGTGTGGTTTACAAGGGAAACACATATTAACGAGAAGTTCATTGGATTCTGTTCGTGTTCCTTCTCACAATTTCCATATGGAGTACTCGTTTCTGACTCAGCGCGGCTACTATCCTGATTCTCCTGATAAAGAAAACCAGGATAGCTTCCGAGTTAGTACTCGAATTCAAGGTAATCCGAATATCCATTTCTTTGGCGTTTTTGATGGGCATGGTCAATACGGTTCGGAGTGTTCGAATTTCGTTAAGGATAGGATTGTGGAAACACTATGTAATGATCCTACATTGTTGGATGATCCTGTTAAAGCTTATAACTCTGCATTTCTAGCCATGAATGATGAATTGCATAAGAGTGAGATTGATGATACCATGAGTGGCACAACAGCTATTACTGTTCTTGTTGTTGGGAATATGCTTTATGTTGCGAATGTGGGTGATTCGAGGGCGGTCATAGCTGTTAAAGATGGGAATCAAATTGTTGCTAAAGATATGTCTTGTGATCAAACACCATTTAGGAAGGATGAGTGCGAGAGAGTGAAGCTCGCCGGAGCTAGGGTGTTAACGATTGATCAAATTGAAGGGCTTAAGGATCCGGATATTCAATCGTGGGGCGATGAGGAGAGCGAGGGAAATGATCCACCTCGGTTGTGGCTCCCTAATAGCTTGTATCCTGGTACTGCATTTACGAGGAGTGTAGGAGACAGTGCAGCCGAGAAAATTGGTGTCTTTGCTGTGCCTGAGGTTTCAATAGTTCAGCTGACTCAAAACCATCTTTTCTTCGTTGTTGCAAGCGATGGAGTTTTCGAGTTCCTTACAAGCCAAGTAGTTGTTGATATGGCTGCAAGGTACCCCGATCCACGAGATGCGTGCTCTGCTATTGCTGGAGAGTCATACAAGCTATGGTTGGAGCATGAAAGTCGGACCGATGATATAACAATCATCGTCGTTCACATCAAAGGACTCTCTAACTCAGTTGCAAATGTCGGGCTGAACGGGGTTTGCTTAAAGCATACGACCTCTGGACGGGGAAGCTCCGAGATATCAGCCTTTGGTGGAAGTTCGGAGGCCTTTCGCTCCATAAGAAGCGATTTCTCAGACGTGGGTTTGACGAACAGGAGCAGAGCAATTGTGGTTCCATCCCCGGCGCAACATCGACCACTGGAAGTGGCTTAA 1263 46.32 MGCVLGKCCNPGRYAPPSSGGGIAQFYDGPPCGLQGKHILTRSSLDSVRVPSHNFHMEYSFLTQRGYYPDSPDKENQDSFRVSTRIQGNPNIHFFGVFDGHGQYGSECSNFVKDRIVETLCNDPTLLDDPVKAYNSAFLAMNDELHKSEIDDTMSGTTAITVLVVGNMLYVANVGDSRAVIAVKDGNQIVAKDMSCDQTPFRKDECERVKLAGARVLTIDQIEGLKDPDIQSWGDEESEGNDPPRLWLPNSLYPGTAFTRSVGDSAAEKIGVFAVPEVSIVQLTQNHLFFVVASDGVFEFLTSQVVVDMAARYPDPRDACSAIAGESYKLWLEHESRTDDITIIVVHIKGLSNSVANVGLNGVCLKHTTSGRGSSEISAFGGSSEAFRSIRSDFSDVGLTNRSRAIVVPSPAQHRPLEVA 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45618828 45621611 + Sed0008742.1 Sed06g2184 718727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2184 420 Gene3D - 45 350 IPR036457 -
Sed06g2184 420 PANTHER PROTEIN PHOSPHATASE 58 347 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed06g2184 420 ProSitePatterns PPM-type phosphatase domain signature. 94 102 IPR000222 GO:0043169(InterPro)
Sed06g2184 420 CDD PP2Cc 74 348 IPR001932 -
Sed06g2184 420 SMART PP2C_4 42 346 IPR001932 -
Sed06g2184 420 SUPERFAMILY PP2C-like 44 350 IPR036457 -
Sed06g2184 420 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 53 350 - -
Sed06g2184 420 Pfam Protein phosphatase 2C 87 320 IPR001932 -
Sed06g2184 420 ProSiteProfiles PPM-type phosphatase domain profile. 58 348 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2184 Sed-Chr6:45618828 Sed06g2186 Sed-Chr6:45618828 6.40E-210 dispersed
Sed06g2184 Sed-Chr6:45618828 Sed06g2185 Sed-Chr6:45618828 1.40E-246 tandem
Sed04g1843 Sed-Chr4:33137976 Sed06g2184 Sed-Chr6:45618828 4.30E-151 transposed
Sed12g1837 Sed-Chr12:29645402 Sed06g2184 Sed-Chr6:45618828 3.80E-118 transposed
Sed06g0122 Sed-Chr6:793915 Sed06g2184 Sed-Chr6:45618828 1.20E-186 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2184 - - - 0.0