Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2186 ATGGGTTGTGTTCTTGGCAAGTGTTGCAATCCCGGCCGCTATGCGCCGCCGTCGTCCGGCGGCGGTATAGCACAATTCTATGATGGGCCGCCGTGTGGTTTACAAGGGAAACACATATTAACGAGAAGTTCATTGGATTCTGTTCGTGTTCCTTCTCACAATTTCCATATGGAGTACTCGTTTCTGACTCAGCGCGGCTACTATCCTGATTCTCCTGATAAAGAAAACCAGGATAGCTTCCGAGTTAGTACTCGAATTCAAGGTAATCCGAATATCCATTTCTTTGGCGTTTTTGATGGGCATGGTCAATACGGTTCGGAGTGTTCGAATTTCGTTAAGGATAGGATTGTGGAAACACTATGTAATGATCCTACATTGTTGGATGATCCTGTTAAAGCTTATAACTCTGCATTTCTAGCCATGAATGATGAATTGCATAAGAGTGAGATTGATGATACCATGAGTGGCACAACAGCTATTACTGTTCTTGTTGTTGGGAATATGCTTTATGTTGCGAATGTGGGTGATTCGAGGGCGGTCATAGCTGTTAAAGATGGGAATCAAATTGTTGCTAAAGATATGTCTTGTGATCAAACACCATTTAGGAAGGATGAGTGCGAGAGAGTGAAGCTCGCCGGAGCTAGGGTGTTAACGATTGATCAAATTGAAGGGCTTAAGGATCCGGATATTCAATCGTGGGGCGATGAGGAGAGCGAGGGAAATGATCCACCTCGGTTGTGGCTCCCTAATAGCTTGTATCCTGGTACTGCATTTACGAGGAGTGTAGGAGACAGTGCAGCCGAGAAAATTGGTGTCTTTGCTGTGCCTGAGGTTTCAATAGTTCAGCTGACTCAAAACCATCTTTTCTTCGTTGTTGCAAGCGATGGAGTTTTCGAGTTCCTTACAAGCCAAGTAGTTGTTGATATGGCTGCAAGGTACCCCGATCCACGAGATGCGTGCTCTGCTATTGCTGGAGAGTCATACAAGCTATGGTTGGAGCATGAAAGTCGGACCGATGATATAACAATCATCGTCGTTCACATCAAAGGACTCTCTAACGTATGA 1065 44.98 MGCVLGKCCNPGRYAPPSSGGGIAQFYDGPPCGLQGKHILTRSSLDSVRVPSHNFHMEYSFLTQRGYYPDSPDKENQDSFRVSTRIQGNPNIHFFGVFDGHGQYGSECSNFVKDRIVETLCNDPTLLDDPVKAYNSAFLAMNDELHKSEIDDTMSGTTAITVLVVGNMLYVANVGDSRAVIAVKDGNQIVAKDMSCDQTPFRKDECERVKLAGARVLTIDQIEGLKDPDIQSWGDEESEGNDPPRLWLPNSLYPGTAFTRSVGDSAAEKIGVFAVPEVSIVQLTQNHLFFVVASDGVFEFLTSQVVVDMAARYPDPRDACSAIAGESYKLWLEHESRTDDITIIVVHIKGLSNV 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45618828 45620833 + Sed0008742.3 Sed06g2186 718729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2186 354 SUPERFAMILY PP2C-like 44 350 IPR036457 -
Sed06g2186 354 ProSitePatterns PPM-type phosphatase domain signature. 94 102 IPR000222 GO:0043169(InterPro)
Sed06g2186 354 CDD PP2Cc 74 348 IPR001932 -
Sed06g2186 354 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 53 350 - -
Sed06g2186 354 Gene3D - 45 350 IPR036457 -
Sed06g2186 354 SMART PP2C_4 42 346 IPR001932 -
Sed06g2186 354 Pfam Protein phosphatase 2C 87 320 IPR001932 -
Sed06g2186 354 ProSiteProfiles PPM-type phosphatase domain profile. 58 348 IPR001932 -
Sed06g2186 354 PANTHER PROTEIN PHOSPHATASE 58 346 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1843 Sed-Chr4:33137976 Sed06g2186 Sed-Chr6:45618828 1.50E-151 dispersed
Sed06g2184 Sed-Chr6:45618828 Sed06g2186 Sed-Chr6:45618828 6.40E-210 dispersed
Sed06g2186 Sed-Chr6:45618828 Sed12g1837 Sed-Chr12:29645402 4.10E-117 dispersed
Sed06g2185 Sed-Chr6:45618828 Sed06g2186 Sed-Chr6:45618828 6.40E-210 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2186 - - - 0.0