Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2213 ATGAGTCGAGAACCGAAGCGGGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCAAAAGAAATTCCTAAAACTGCATTGGTTTGGGCGTTGACTCATGTGGTTCAACTTGGAGATTGCATAACTCTTTTGGTTGTTGTCCCTTCTCAAAGCCCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTTCCGGGGACTGTGCAAGTGCTCACAAGAAAGCTTACACTGGAACAAATTCCGAGCAGAAATGTGATATTACCGATTCCTGCTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCTAACAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCGCCTAGTGGGGCTGTTGCTGCTGAAGCTAAGAGAGCTCAAGCTAGTTGGGTTGTATTAGACAAACAGCTCAAACACGAAGAGAAATCTTGTATGGAAGAGTTACAATGCAACATTGTGGTAATGAAACGATCTCAACCGAAAGTTCTTCGCTTGAACCTGGTTGGTACTTCAAAGGAGCCAGAACTGCCCTCTCCCTTACATTCTGATGAAGATGAAGGGTCTGAAAGCCATAAAAAAGATAACAATGATCATCTAGATTTTATTCGGGGGCCGGTCGTGACCCCCAATAGCAGTCCAGAGTTAGGCACACCTTTTACCGCTACCGAAGCTGGAACATCATCGGTGTCGAGCTCCGATCTTGGAACTTCACCATTTTTCAACTCTGACATGAATGGAGACACAAAGAAAGAGGAATTGTTTGTTATCAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGAGTCAGATATTGAAAATTTATCTGTATCTTCACGGAGCTTAAGATTCCAACCATGGATGACAGAGTTAATAAGTTCTCATTTTCAATCTTCACGACACATAAGTGGAAGATCACAGAGATGTGATGATAGGAATCAGGTGTCAACAAGAAAATCTTTTCTACCAAAGTCTGCAAAACTTGACAGAGAATCTAGTATTGAAATATCAAGCCATAGAAGTGACAATGATTTCCATGGGGACGTACGAGATGCTGTTTCATTATCCAGAAACTCGCCACCGGGTCCCCCTCCATTGTGTTCAATATGTCAACACAAGGCACCGGTTTTCGGAAAGCCTCCGAGGTGGTTCAGCTATGGTGAGCTCGAGCTTGCCACGGGTGGATTTTCGCAAGCCAACTTTTTGGCAGAAGGAGGATATGGATCGGTTCACCGAGGGATACTCCCGGACGGACAGGTGGTTGCTGTCAAGCAGCATAAGCTAGCTAGTTCTCAGGGTGACCTCGAATTTTGTTCAGAAGTTGAAGTTCTTAGCTGTGCACAACATAGAAATGTTGTTATGTTGATTGGGTTTTGTATAGAGGAGAAACGAAGGTTGTTGGTTTATGAATACATCTGCAATGGCTCATTGGATTCTCATTTATATGGACGCCAACAAGAGCCATTAGAATGGTCTGCACGGCAAAAAATTGCAGTGGGAGCTGCACGGGGTCTACGATATCTCCACGAAGAATGTCGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCGAACAACATTCTTATCACTCATGATTTTGAGCCACTGGTTGGAGACTTTGGTCTTGCAAGGTGGCAGCCTGACGGAGATACCGGTGTTGAGACACGAGTTATCGGAACATTTGGGTATTTAGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTTTATTCCTTTGGGGTAGTATTGGTTGAGCTAATTACTGGAAGAAAAGCCGTTGACCTCAGTCGTCCGAAAGGTCAACAGTGCCTCACTGAATGGGCGCGCCCCCTGTTGGTTGAACTCGTCGTTGATGAACTGATTGATCCAAGGTTGGGGAATAGCTTCACGGAGCATGAGGTGTACTGCATGCTGCATGCTGCATCGTTATGCATCCGAAGAGATCCTAACACAAGGCCTCGTATGTCACAGGTTTTACGGATACTCGAGGGCGACCTCGTCATGGATTCTAATTACTTGACAATTCCTGGATACGATGTGGGAAATCGGAGTGGTCGGATGTGGACTGAGCAGCAGCAGCAGCAAAACTACAGTGGCTCCTTATCAGAAGAGACTCTAGAAAGGTTCAATGAAAAGGTTTGTCTTGAAAGTTTAAGACCAAGTTACTGGGAAAGGGATAAGACAAGGAGGACTTCAAATGAAAGTAATTTGTAA 2250 44.49 MSREPKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQLGDCITLLVVVPSQSPGRKFWGFPRFSGDCASAHKKAYTGTNSEQKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAQASWVVLDKQLKHEEKSCMEELQCNIVVMKRSQPKVLRLNLVGTSKEPELPSPLHSDEDEGSESHKKDNNDHLDFIRGPVVTPNSSPELGTPFTATEAGTSSVSSSDLGTSPFFNSDMNGDTKKEELFVIKENKELDAASSESDIENLSVSSRSLRFQPWMTELISSHFQSSRHISGRSQRCDDRNQVSTRKSFLPKSAKLDRESSIEISSHRSDNDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWFSYGELELATGGFSQANFLAEGGYGSVHRGILPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLVELVVDELIDPRLGNSFTEHEVYCMLHAASLCIRRDPNTRPRMSQVLRILEGDLVMDSNYLTIPGYDVGNRSGRMWTEQQQQQNYSGSLSEETLERFNEKVCLESLRPSYWERDKTRRTSNESNL 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45811306 45817311 + Sed0007963.1 Sed06g2213 718756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2213 749 MobiDBLite consensus disorder prediction 177 253 - -
Sed06g2213 749 SUPERFAMILY Protein kinase-like (PK-like) 388 686 IPR011009 -
Sed06g2213 749 ProSiteProfiles Protein kinase domain profile. 404 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2213 749 CDD STKc_IRAK 410 676 - -
Sed06g2213 749 Pfam Protein tyrosine and serine/threonine kinase 408 673 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2213 749 MobiDBLite consensus disorder prediction 219 253 - -
Sed06g2213 749 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Sed06g2213 749 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 683 - -
Sed06g2213 749 MobiDBLite consensus disorder prediction 312 359 - -
Sed06g2213 749 MobiDBLite consensus disorder prediction 186 209 - -
Sed06g2213 749 FunFam Dual-specific kinase DSK1-like 11 165 - -
Sed06g2213 749 Gene3D HUPs 5 164 IPR014729 -
Sed06g2213 749 PANTHER OS01G0750732 PROTEIN 206 687 IPR050885 -
Sed06g2213 749 Gene3D Transferase(Phosphotransferase) domain 1 480 684 - -
Sed06g2213 749 MobiDBLite consensus disorder prediction 306 368 - -
Sed06g2213 749 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2213 749 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2698 Sed-Chr4:39308793 Sed06g2213 Sed-Chr6:45811306 2.40E-77 dispersed
Sed05g3884 Sed-Chr5:46297275 Sed06g2213 Sed-Chr6:45811306 2.10E-68 dispersed
Sed06g0089 Sed-Chr6:549039 Sed06g2213 Sed-Chr6:45811306 0.00E+00 dispersed
Sed06g0090 Sed-Chr6:549039 Sed06g2213 Sed-Chr6:45811306 0.00E+00 dispersed
Sed06g2213 Sed-Chr6:45811306 Sed13g1683 Sed-Chr13:21839602 2.10E-155 dispersed
Sed06g2213 Sed-Chr6:45811306 Sed06g2214 Sed-Chr6:45811306 0.00E+00 tandem
Sed12g1774 Sed-Chr12:28883128 Sed06g2213 Sed-Chr6:45811306 1.80E-222 transposed
Sed06g0088 Sed-Chr6:549039 Sed06g2213 Sed-Chr6:45811306 0.00E+00 wgd
Sed06g2213 Sed-Chr6:45811306 Sed07g1324 Sed-Chr7:10123823 4.30E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79405 PF07714 PK_Tyr_Ser-Thr 5.70E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2213 - - - 0.0