Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2214 ATGAGTCGAGAACCGAAGCGGGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCAAAAGAAATTCCTAAAACTGCATTGGTTTGGGCGTTGACTCATGTGGTTCAACTTGGAGATTGCATAACTCTTTTGGTTGTTGTCCCTTCTCAAAGCCCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTTCCGGGGACTGTGCAAGTGCTCACAAGAAAGCTTACACTGGAACAAATTCCGAGCAGAAATGTGATATTACCGATTCCTGCTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCTAACAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCGCCTAGTGGGGCTGTTGCTGCTGAAGCTAAGAGAGCTCAAGCTAGTTGGGTTGTATTAGACAAACAGCTCAAACACGAAGAGAAATCTTGTATGGAAGAGTTACAATGCAACATTGTGGTAATGAAACGATCTCAACCGAAAGTTCTTCGCTTGAACCTGGTTGGTACTTCAAAGGAGCCAGAACTGCCCTCTCCCTTACATTCTGATGAAGATGAAGGGTCTGAAAGCCATAAAAAAGATAACAATGATCATCTAGATTTTATTCGGGGGCCGGTCGTGACCCCCAATAGCAGTCCAGAGTTAGGCACACCTTTTACCGCTACCGAAGCTGGAACATCATCGGTGTCGAGCTCCGATCTTGGAACTTCACCATTTTTCAACTCTGACATGAATGGAGACACAAAGAAAGAGGAATTGTTTGTTATCAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGAGTCAGATATTGAAAATTTATCTGTATCTTCACGGAGCTTAAGATTCCAACCATGGATGACAGAGTTAATAAGTTCTCATTTTCAATCTTCACGACACATAAGTGGAAGATCACAGAGATGTGATGATAGGAATCAGGTGTCAACAAGAAAATCTTTTCTACCAAAGTCTGCAAAACTTGACAGAGAATCTAGTATTGAAATATCAAGCCATAGAAGTGACAATGATTTCCATGGGGACGTACGAGATGCTGTTTCATTATCCAGAAACTCGCCACCGGGTCCCCCTCCATTGTGTTCAATATGTCAACACAAGGCACCGGTTTTCGGAAAGCCTCCGAGGTGGTTCAGCTATGGTGAGCTCGAGCTTGCCACGGGTGGATTTTCGCAAGCCAACTTTTTGGCAGAAGGAGGATATGGATCGGTTCACCGAGGGATACTCCCGGACGGACAGGTGGTTGCTGTCAAGCAGCATAAGCTAGCTAGTTCTCAGGGTGACCTCGAATTTTGTTCAGAAGTTGAAGTTCTTAGCTGTGCACAACATAGAAATGTTGTTATGTTGATTGGGTTTTGTATAGAGGAGAAACGAAGGTTGTTGGTTTATGAATACATCTGCAATGGCTCATTGGATTCTCATTTATATGGTACATTTTCAGGACGCCAACAAGAGCCATTAGAATGGTCTGCACGGCAAAAAATTGCAGTGGGAGCTGCACGGGGTCTACGATATCTCCACGAAGAATGTCGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCGAACAACATTCTTATCACTCATGATTTTGAGCCACTGGTTGGAGACTTTGGTCTTGCAAGGTGGCAGCCTGACGGAGATACCGGTGTTGAGACACGAGTTATCGGAACATTTGGGTATTTAGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTTTATTCCTTTGGGGTAGTATTGGTTGAGCTAATTACTGGAAGAAAAGCCGTTGACCTCAGTCGTCCGAAAGGTCAACAGTGCCTCACTGAATGGGCGCGCCCCCTGTTGGTTGAACTCGTCGTTGATGAACTGATTGATCCAAGGTTGGGGAATAGCTTCACGGAGCATGAGGTGTACTGCATGCTGCATGCTGCATCGTTATGCATCCGAAGAGATCCTAACACAAGGCCTCGTATGTCACAGGTTTTACGGATACTCGAGGGCGACCTCGTCATGGATTCTAATTACTTGACAATTCCTGGATACGATGTGGGAAATCGGAGTGGTCGGATGTGGACTGAGCAGCAGCAGCAGCAAAACTACAGTGGCTCCTTATCAGAAGAGACTCTAGAAAGGTTCAATGAAAAGGTTTGTCTTGAAAGTTTAAGACCAAGTTACTGGGAAAGGGATAAGACAAGGAGGACTTCAAATGAAAGTAATTTGTAA 2262 44.43 MSREPKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQLGDCITLLVVVPSQSPGRKFWGFPRFSGDCASAHKKAYTGTNSEQKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAQASWVVLDKQLKHEEKSCMEELQCNIVVMKRSQPKVLRLNLVGTSKEPELPSPLHSDEDEGSESHKKDNNDHLDFIRGPVVTPNSSPELGTPFTATEAGTSSVSSSDLGTSPFFNSDMNGDTKKEELFVIKENKELDAASSESDIENLSVSSRSLRFQPWMTELISSHFQSSRHISGRSQRCDDRNQVSTRKSFLPKSAKLDRESSIEISSHRSDNDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWFSYGELELATGGFSQANFLAEGGYGSVHRGILPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGTFSGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLVELVVDELIDPRLGNSFTEHEVYCMLHAASLCIRRDPNTRPRMSQVLRILEGDLVMDSNYLTIPGYDVGNRSGRMWTEQQQQQNYSGSLSEETLERFNEKVCLESLRPSYWERDKTRRTSNESNL 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45811306 45817311 + Sed0007963.2 Sed06g2214 718757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2214 753 MobiDBLite consensus disorder prediction 177 253 - -
Sed06g2214 753 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 687 - -
Sed06g2214 753 Pfam Protein tyrosine and serine/threonine kinase 408 677 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2214 753 SUPERFAMILY Protein kinase-like (PK-like) 388 690 IPR011009 -
Sed06g2214 753 MobiDBLite consensus disorder prediction 219 253 - -
Sed06g2214 753 ProSiteProfiles Protein kinase domain profile. 404 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2214 753 MobiDBLite consensus disorder prediction 312 359 - -
Sed06g2214 753 MobiDBLite consensus disorder prediction 186 209 - -
Sed06g2214 753 FunFam Dual-specific kinase DSK1-like 11 165 - -
Sed06g2214 753 Gene3D HUPs 5 164 IPR014729 -
Sed06g2214 753 MobiDBLite consensus disorder prediction 306 368 - -
Sed06g2214 753 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Sed06g2214 753 ProSitePatterns Tyrosine protein kinases specific active-site signature. 529 541 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2214 753 Gene3D Transferase(Phosphotransferase) domain 1 480 688 - -
Sed06g2214 753 PANTHER OS01G0750732 PROTEIN 206 691 IPR050885 -
Sed06g2214 753 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
Sed06g2214 753 CDD STKc_IRAK 410 680 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0088 Sed-Chr6:549039 Sed06g2214 Sed-Chr6:45811306 0.00E+00 dispersed
Sed06g2214 Sed-Chr6:45811306 Sed12g1774 Sed-Chr12:28883128 7.10E-220 dispersed
Sed06g2213 Sed-Chr6:45811306 Sed06g2214 Sed-Chr6:45811306 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79406 PF00069 Pkinase 9.40E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2214 - - - 0.0