Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2214 | ATGAGTCGAGAACCGAAGCGGGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCAAAAGAAATTCCTAAAACTGCATTGGTTTGGGCGTTGACTCATGTGGTTCAACTTGGAGATTGCATAACTCTTTTGGTTGTTGTCCCTTCTCAAAGCCCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTTCCGGGGACTGTGCAAGTGCTCACAAGAAAGCTTACACTGGAACAAATTCCGAGCAGAAATGTGATATTACCGATTCCTGCTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCTAACAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCGCCTAGTGGGGCTGTTGCTGCTGAAGCTAAGAGAGCTCAAGCTAGTTGGGTTGTATTAGACAAACAGCTCAAACACGAAGAGAAATCTTGTATGGAAGAGTTACAATGCAACATTGTGGTAATGAAACGATCTCAACCGAAAGTTCTTCGCTTGAACCTGGTTGGTACTTCAAAGGAGCCAGAACTGCCCTCTCCCTTACATTCTGATGAAGATGAAGGGTCTGAAAGCCATAAAAAAGATAACAATGATCATCTAGATTTTATTCGGGGGCCGGTCGTGACCCCCAATAGCAGTCCAGAGTTAGGCACACCTTTTACCGCTACCGAAGCTGGAACATCATCGGTGTCGAGCTCCGATCTTGGAACTTCACCATTTTTCAACTCTGACATGAATGGAGACACAAAGAAAGAGGAATTGTTTGTTATCAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGAGTCAGATATTGAAAATTTATCTGTATCTTCACGGAGCTTAAGATTCCAACCATGGATGACAGAGTTAATAAGTTCTCATTTTCAATCTTCACGACACATAAGTGGAAGATCACAGAGATGTGATGATAGGAATCAGGTGTCAACAAGAAAATCTTTTCTACCAAAGTCTGCAAAACTTGACAGAGAATCTAGTATTGAAATATCAAGCCATAGAAGTGACAATGATTTCCATGGGGACGTACGAGATGCTGTTTCATTATCCAGAAACTCGCCACCGGGTCCCCCTCCATTGTGTTCAATATGTCAACACAAGGCACCGGTTTTCGGAAAGCCTCCGAGGTGGTTCAGCTATGGTGAGCTCGAGCTTGCCACGGGTGGATTTTCGCAAGCCAACTTTTTGGCAGAAGGAGGATATGGATCGGTTCACCGAGGGATACTCCCGGACGGACAGGTGGTTGCTGTCAAGCAGCATAAGCTAGCTAGTTCTCAGGGTGACCTCGAATTTTGTTCAGAAGTTGAAGTTCTTAGCTGTGCACAACATAGAAATGTTGTTATGTTGATTGGGTTTTGTATAGAGGAGAAACGAAGGTTGTTGGTTTATGAATACATCTGCAATGGCTCATTGGATTCTCATTTATATGGTACATTTTCAGGACGCCAACAAGAGCCATTAGAATGGTCTGCACGGCAAAAAATTGCAGTGGGAGCTGCACGGGGTCTACGATATCTCCACGAAGAATGTCGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCGAACAACATTCTTATCACTCATGATTTTGAGCCACTGGTTGGAGACTTTGGTCTTGCAAGGTGGCAGCCTGACGGAGATACCGGTGTTGAGACACGAGTTATCGGAACATTTGGGTATTTAGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTTTATTCCTTTGGGGTAGTATTGGTTGAGCTAATTACTGGAAGAAAAGCCGTTGACCTCAGTCGTCCGAAAGGTCAACAGTGCCTCACTGAATGGGCGCGCCCCCTGTTGGTTGAACTCGTCGTTGATGAACTGATTGATCCAAGGTTGGGGAATAGCTTCACGGAGCATGAGGTGTACTGCATGCTGCATGCTGCATCGTTATGCATCCGAAGAGATCCTAACACAAGGCCTCGTATGTCACAGGTTTTACGGATACTCGAGGGCGACCTCGTCATGGATTCTAATTACTTGACAATTCCTGGATACGATGTGGGAAATCGGAGTGGTCGGATGTGGACTGAGCAGCAGCAGCAGCAAAACTACAGTGGCTCCTTATCAGAAGAGACTCTAGAAAGGTTCAATGAAAAGGTTTGTCTTGAAAGTTTAAGACCAAGTTACTGGGAAAGGGATAAGACAAGGAGGACTTCAAATGAAAGTAATTTGTAA | 2262 | 44.43 | MSREPKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQLGDCITLLVVVPSQSPGRKFWGFPRFSGDCASAHKKAYTGTNSEQKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAQASWVVLDKQLKHEEKSCMEELQCNIVVMKRSQPKVLRLNLVGTSKEPELPSPLHSDEDEGSESHKKDNNDHLDFIRGPVVTPNSSPELGTPFTATEAGTSSVSSSDLGTSPFFNSDMNGDTKKEELFVIKENKELDAASSESDIENLSVSSRSLRFQPWMTELISSHFQSSRHISGRSQRCDDRNQVSTRKSFLPKSAKLDRESSIEISSHRSDNDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWFSYGELELATGGFSQANFLAEGGYGSVHRGILPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGTFSGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLVELVVDELIDPRLGNSFTEHEVYCMLHAASLCIRRDPNTRPRMSQVLRILEGDLVMDSNYLTIPGYDVGNRSGRMWTEQQQQQNYSGSLSEETLERFNEKVCLESLRPSYWERDKTRRTSNESNL | 753 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 45811306 | 45817311 | + | Sed0007963.2 | Sed06g2214 | 718757 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2214 | 753 | MobiDBLite | consensus disorder prediction | 177 | 253 | - | - | |
Sed06g2214 | 753 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 480 | 687 | - | - | |
Sed06g2214 | 753 | Pfam | Protein tyrosine and serine/threonine kinase | 408 | 677 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed06g2214 | 753 | SUPERFAMILY | Protein kinase-like (PK-like) | 388 | 690 | IPR011009 | - | |
Sed06g2214 | 753 | MobiDBLite | consensus disorder prediction | 219 | 253 | - | - | |
Sed06g2214 | 753 | ProSiteProfiles | Protein kinase domain profile. | 404 | 689 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g2214 | 753 | MobiDBLite | consensus disorder prediction | 312 | 359 | - | - | |
Sed06g2214 | 753 | MobiDBLite | consensus disorder prediction | 186 | 209 | - | - | |
Sed06g2214 | 753 | FunFam | Dual-specific kinase DSK1-like | 11 | 165 | - | - | |
Sed06g2214 | 753 | Gene3D | HUPs | 5 | 164 | IPR014729 | - | |
Sed06g2214 | 753 | MobiDBLite | consensus disorder prediction | 306 | 368 | - | - | |
Sed06g2214 | 753 | Gene3D | Phosphorylase Kinase; domain 1 | 376 | 479 | - | - | |
Sed06g2214 | 753 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 529 | 541 | IPR008266 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed06g2214 | 753 | Gene3D | Transferase(Phosphotransferase) domain 1 | 480 | 688 | - | - | |
Sed06g2214 | 753 | PANTHER | OS01G0750732 PROTEIN | 206 | 691 | IPR050885 | - | |
Sed06g2214 | 753 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 376 | 479 | - | - | |
Sed06g2214 | 753 | CDD | STKc_IRAK | 410 | 680 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0088 | Sed-Chr6:549039 | Sed06g2214 | Sed-Chr6:45811306 | 0.00E+00 | dispersed | |
Sed06g2214 | Sed-Chr6:45811306 | Sed12g1774 | Sed-Chr12:28883128 | 7.10E-220 | dispersed | |
Sed06g2213 | Sed-Chr6:45811306 | Sed06g2214 | Sed-Chr6:45811306 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79406 | PF00069 | Pkinase | 9.40E-40 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2214 | - | - | - | 0.0 |