Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2216 ATGGCAATGGAGGGGAAGCAGAAGTTCTTACACGGCACGCTCGAAGTTACCATCTTTCGTGCAACAACATATATACCGCCATCACCTCTAGATTGCATATTTTCAGGAGGAAAGCATAGCTATGTGACCATCAAAATCGACAACAAAGAGGTAGCTCAAACAACCCACGAACAAGACCGTGTTTGGAACCAGACATTCCGAGTTCTATGTGCACATCCATTGACTTCTACCATCACCATTACAATGAAAACATCTCGATCTATCTTGGGAAGGTTCCAAATCCAAGGCCAACAGATTTTGAAAGAAGCAAGTTTCATCAATGGTTTCTTTCCACTTCTTATGGAAAATGGGAAGCCGAGCCCTGAGCTCAGACTTCGGTTCATGCTATGGTTTAAACCAGCAGTGTACGAATTAAGTTGGAAAAAGATGTTGGAAAATGGAGATTACAAAGGGCTAAGAAGTGCAACATTTCCTCTAAGGTCCAACTGTCATGTGACTCTATATCAAGATGCTCACCATCTCCCTACGTTTCAGCCTCCGATTCATGGTTCGAGTTCGCCAAGAAAGCTATGGCAAGATGTGTATAAGGCCATTGAAAATGCAAAGTATTTGGTTTACATTGCTGGCTGGTCTTTCAATCCAAAGTTGGTGCTGGTAAGGGATTCTCAGACTGATATACCCTATGCTTTAGGAGTAAAGCTTGGTGAGCTATTGAAGCAGAAGGCAGAGGAAGGAGTAGCTGTGAGACTACTAATTTGGGACGATGAAACATCCCTTCCCATTATCAAGAATGCTGGGATAATGAAAACACACGACGAAGATGCTCGAGCATATTTCTCGAACTCGAAAGTTATATGTAGGCTGTGCCCCAAATTACATCCTATGTCTCCACCAATTTTCTCTCATCATCAGAAAACCATAATCGTAGATGCTCAAACTCACATCAATGCACGGAATAGGGAGATTATGAGTTTCGTAGGGGGTTTAGATCTTTGTGATGGTCGCTACGACACGGAACAACATTCATTGTTCCAAACTTTGAATACAGAATCCCATTGCAGTGATTTCTACCAAACGAGTATATCAGGTGCCAAGCTTCAAAAAGGAGGACCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCTTGGGATATATTAACAAATTTCGAGCAAAGATGGACTAAGCAATCAAATGCTTCATTGTTAGTCCCAACAAGCATCTTATTGAAACTGATGCCCCAACTTGAATCAAACACAGATTTGCAGAAGGATTGGCATATGCAAGTTTTTCGATCTATTGACCACTTGTCTGCCAGCCAAGGGTTCGGAAACTTGACCGTCGAACGCTCCATCCATGAGGCTTATGTTGAAGCTATCAGGAGAGCTGAGAGATTCATTTACATTGAAAACCAATATTTTATAGGAGGGTGTCACTTGTGGGACAAAGACCAACACTGTGGATGCACGAATTTGATACCGATCGAGATTGCGCTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAGGTTTGCAGTTTATATAGTGATTCCAATGTGGCCAGAAGGACCACCAGAGAGTGAATCAGTTGAGGATATGCTACATTGGACAAGACAGACAATGACAATGATGTATAGAATGATTGGAGAAGCAATCCAAGAAACAGGGGAGATGGCCCATCCAAGAGACTATTTGAATTTTTTTTGCCTTGCAAACAGAGAAGAAGCCAGAAAATGGGACTTTGTTCCCCCACATAGTCCCCAACATGCAACACAATACTGGAATGCTCAACAACATAGGAGGTTCATGATCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACCTTGTAATCGGATCCGCCAACGTAAACCAGAGATCGATGGACGGAGAACGAGACACGGAGATAGCAATCGGATGCTACCAATCAAACAACGGAAGAGACATCGAAACATTTCGGCTATCGCTGTGGTACGAACACACGCAAGGATTCGAAGAACTGTTCTTACACCCCGAGAAACTGGAATGCGTTAAAAGGGTTCGTTCAATAGGGGAGGAATCGTGGAAAACTTACAGTGGAGACGAAATTGCAGACATGGAAGGGGTTCATCTCGTAACGTACCCGGTGAAGGTGAAACGGGACGGATCGGTTGAGGATTTGGAAGAAAACGGAGGCCGTTTTCCCGATACCAAATGCTCCATTAAAGGAAGAAGATCGCTGTTCTTGCCGCCCATTTTCACGACCTAG 2265 43.62 MAMEGKQKFLHGTLEVTIFRATTYIPPSPLDCIFSGGKHSYVTIKIDNKEVAQTTHEQDRVWNQTFRVLCAHPLTSTITITMKTSRSILGRFQIQGQQILKEASFINGFFPLLMENGKPSPELRLRFMLWFKPAVYELSWKKMLENGDYKGLRSATFPLRSNCHVTLYQDAHHLPTFQPPIHGSSSPRKLWQDVYKAIENAKYLVYIAGWSFNPKLVLVRDSQTDIPYALGVKLGELLKQKAEEGVAVRLLIWDDETSLPIIKNAGIMKTHDEDARAYFSNSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINARNREIMSFVGGLDLCDGRYDTEQHSLFQTLNTESHCSDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSNASLLVPTSILLKLMPQLESNTDLQKDWHMQVFRSIDHLSASQGFGNLTVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVEDMLHWTRQTMTMMYRMIGEAIQETGEMAHPRDYLNFFCLANREEARKWDFVPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYLVIGSANVNQRSMDGERDTEIAIGCYQSNNGRDIETFRLSLWYEHTQGFEELFLHPEKLECVKRVRSIGEESWKTYSGDEIADMEGVHLVTYPVKVKRDGSVEDLEENGGRFPDTKCSIKGRRSLFLPPIFTT 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45828442 45832393 + Sed0019042.1 Sed06g2216 718759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2216 754 Gene3D Endonuclease Chain A 173 428 - -
Sed06g2216 754 SUPERFAMILY Phospholipase D/nuclease 421 683 - -
Sed06g2216 754 SUPERFAMILY Phospholipase D/nuclease 149 409 - -
Sed06g2216 754 PIRSF PLD_plant 2 754 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed06g2216 754 Gene3D Endonuclease Chain A 449 665 - -
Sed06g2216 754 Gene3D C2 domain 2 131 IPR035892 -
Sed06g2216 754 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
Sed06g2216 754 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
Sed06g2216 754 PANTHER PHOSPHOLIPASE D 38 738 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed06g2216 754 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
Sed06g2216 754 Pfam Phospholipase D C terminal 671 743 IPR024632 -
Sed06g2216 754 Pfam C2 domain 12 103 IPR000008 -
Sed06g2216 754 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 128 IPR035892 -
Sed06g2216 754 Pfam Phospholipase D Active site motif 608 633 IPR001736 GO:0003824(InterPro)
Sed06g2216 754 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2216 Sed-Chr6:45828442 Sed07g0780 Sed-Chr7:5807850 1.70E-165 dispersed
Sed06g2216 Sed-Chr6:45828442 Sed09g1494 Sed-Chr9:38679941 1.80E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2216 K01115 - csv:101206396 1420.22