Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2222 ATGATAAAAAGTAATTTGTTGTTTCAACAACAAGCTCAAGCTATGGAGGAAAATCTGTCAAATTTGACTTCAGCTTCTGGTGAAGCTAGTGCTTGCTCCGGCAGCCATTCCGATCAGATTCCGGCGAACTATTCCGGCGGCCAGTATTTTTCTGCCCCACCAGCTCCAAAAAAGAAGAGAAATCTCCCCGGAAATCCAGACCCAGATGCGGAAGTGATAGCGTTATCCCCGAAGACGCTAATGGCGACGAATAGATTCCTATGCGAGATTTGCAACAAGGGGTTCAAGAGAGATCAAAATCTTCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAGCCAACAAAGAGGTTGTAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATAATGATCCAGCAAGGGCTCTTGGGGATTTGACAGGAATAAAGAAACACTTTTTCAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCAGACTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAACCATTACCTCAAACCCAATACTTATGGCCAATAATAATAATCATAATCATAATATTCAAATCCCTCCATTAATTCCCACTTCCATTTCTCCAATCTCTCACTTAAACTTCCAAACACAAACCCATTTCAATCCTCTAGATATCAACTCATTTTCCCTCAAAAAAGAACACCAAATTAATTCATCATCCAATTTCATTCCCCCATGGTTGCCTTGTCCTCCAAGATTATCATCATCATCATTAAATAATCTTAATAATGATAATCAAGAGCTTAATCCTCCTCATAATCTCATGATTAATAACCCTAATCATCATCTAATTTCCCAAGCTTCATCTCCTCACATGTCAGCCACAGCACTTCTACAAAAAGCAGCTCAAATGGGAGCAACCATGAGCAGGCCCCACCAGCAGCACTCACGTGATCATCACGTGACTGATTCTTCTTCTGCCAATAGTAATAATATTAATAATAATACAAGTTGTAATTTTGGCATTAACTTGTGTTCCTCACGTGACAGTCAGATTTTTCAAAGTGGTGCTTTTGAAGGGGGGTCTTTTGATCAATTAGATGCATTTGGAGGGACCTTGAAGAAAAATCATGAGATAGTTTTTAATGAGAATACAATGATGTCAAGTGAAGATCAAGGGTTGAGTACAAGAGATTTTTTGGGGCTTAGACCAATTTCTCATAGTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCTTGAATAATGGAGCCTCTGGTCAAAGTCCTCAAAGTCAACTTCAAAAGCAACCCAGCTGGCAAGGTTAG 1464 39.62 MIKSNLLFQQQAQAMEENLSNLTSASGEASACSGSHSDQIPANYSGGQYFSAPPAPKKKRNLPGNPDPDAEVIALSPKTLMATNRFLCEICNKGFKRDQNLQLHRRGHNLPWKLKQRANKEVVRKKVYVCPETSCVHNDPARALGDLTGIKKHFFRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTITSNPILMANNNNHNHNIQIPPLIPTSISPISHLNFQTQTHFNPLDINSFSLKKEHQINSSSNFIPPWLPCPPRLSSSSLNNLNNDNQELNPPHNLMINNPNHHLISQASSPHMSATALLQKAAQMGATMSRPHQQHSRDHHVTDSSSANSNNINNNTSCNFGINLCSSRDSQIFQSGAFEGGSFDQLDAFGGTLKKNHEIVFNENTMMSSEDQGLSTRDFLGLRPISHSEFLSNIAAAGYGNCLNNGASGQSPQSQLQKQPSWQG 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45918264 45921965 - Sed0025048.1 Sed06g2222 718765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2222 487 FunFam protein indeterminate-domain 12-like 65 134 - -
Sed06g2222 487 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Sed06g2222 487 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 162 186 - -
Sed06g2222 487 MobiDBLite consensus disorder prediction 349 373 - -
Sed06g2222 487 MobiDBLite consensus disorder prediction 43 70 - -
Sed06g2222 487 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 189 225 - -
Sed06g2222 487 SMART c2h2final6 86 108 IPR013087 -
Sed06g2222 487 SMART c2h2final6 163 183 IPR013087 -
Sed06g2222 487 SMART c2h2final6 128 158 IPR013087 -
Sed06g2222 487 Gene3D Classic Zinc Finger 142 221 - -
Sed06g2222 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Sed06g2222 487 Gene3D Classic Zinc Finger 66 137 - -
Sed06g2222 487 Pfam Zinc finger, C2H2 type 86 108 IPR013087 -
Sed06g2222 487 FunFam protein indeterminate-domain 5, chloroplastic-like 141 220 - -
Sed06g2222 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 451 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed06g2222 487 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 124 158 - -
Sed06g2222 487 SUPERFAMILY beta-beta-alpha zinc fingers 85 183 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2222 Sed-Chr6:45918264 Sed09g1096 Sed-Chr9:34860892 5.50E-88 dispersed
Sed06g2222 Sed-Chr6:45918264 Sed06g2223 Sed-Chr6:45918264 1.20E-239 tandem
Sed04g3966 Sed-Chr4:47585521 Sed06g2222 Sed-Chr6:45918264 7.20E-85 transposed
Sed06g0083 Sed-Chr6:477339 Sed06g2222 Sed-Chr6:45918264 1.90E-178 wgd
Sed06g2222 Sed-Chr6:45918264 Sed07g1321 Sed-Chr7:10092360 9.90E-106 wgd
Sed06g2222 Sed-Chr6:45918264 Sed09g1680 Sed-Chr9:40159673 1.70E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38943 PF00096 zf-C2H2 0.0039 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2222 K25870 - csv:101204728 549.28