Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2223 ATGGCGACGAATAGATTCCTATGCGAGATTTGCAACAAGGGGTTCAAGAGAGATCAAAATCTTCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAGCCAACAAAGAGGTTGTAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATAATGATCCAGCAAGGGCTCTTGGGGATTTGACAGGAATAAAGAAACACTTTTTCAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCAGACTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAACCATTACCTCAAACCCAATACTTATGGCCAATAATAATAATCATAATCATAATATTCAAATCCCTCCATTAATTCCCACTTCCATTTCTCCAATCTCTCACTTAAACTTCCAAACACAAACCCATTTCAATCCTCTAGATATCAACTCATTTTCCCTCAAAAAAGAACACCAAATTAATTCATCATCCAATTTCATTCCCCCATGGTTGCCTTGTCCTCCAAGATTATCATCATCATCATTAAATAATCTTAATAATGATAATCAAGAGCTTAATCCTCCTCATAATCTCATGATTAATAACCCTAATCATCATCTAATTTCCCAAGCTTCATCTCCTCACATGTCAGCCACAGCACTTCTACAAAAAGCAGCTCAAATGGGAGCAACCATGAGCAGGCCCCACCAGCAGCACTCACGTGATCATCACGTGACTGATTCTTCTTCTGCCAATAGTAATAATATTAATAATAATACAAGTTGTAATTTTGGCATTAACTTGTGTTCCTCACGTGACAGTCAGATTTTTCAAAGTGGTGCTTTTGAAGGGGGGTCTTTTGATCAATTAGATGCATTTGGAGGGACCTTGAAGAAAAATCATGAGATAGTTTTTAATGAGAATACAATGATGTCAAGTGAAGATCAAGGGTTGAGTACAAGAGATTTTTTGGGGCTTAGACCAATTTCTCATAGTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCTTGAATAATGGAGCCTCTGGTCAAAGTCCTCAAAGTCAACTTCAAAAGCAACCCAGCTGGCAAGGTTAG 1224 38.24 MATNRFLCEICNKGFKRDQNLQLHRRGHNLPWKLKQRANKEVVRKKVYVCPETSCVHNDPARALGDLTGIKKHFFRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTITSNPILMANNNNHNHNIQIPPLIPTSISPISHLNFQTQTHFNPLDINSFSLKKEHQINSSSNFIPPWLPCPPRLSSSSLNNLNNDNQELNPPHNLMINNPNHHLISQASSPHMSATALLQKAAQMGATMSRPHQQHSRDHHVTDSSSANSNNINNNTSCNFGINLCSSRDSQIFQSGAFEGGSFDQLDAFGGTLKKNHEIVFNENTMMSSEDQGLSTRDFLGLRPISHSEFLSNIAAAGYGNCLNNGASGQSPQSQLQKQPSWQG 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45918264 45922164 - Sed0025048.2 Sed06g2223 718766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2223 407 MobiDBLite consensus disorder prediction 269 293 - -
Sed06g2223 407 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 109 145 - -
Sed06g2223 407 Gene3D Classic Zinc Finger 2 29 - -
Sed06g2223 407 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 44 78 - -
Sed06g2223 407 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Sed06g2223 407 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Sed06g2223 407 FunFam protein indeterminate-domain 5, chloroplastic-like 61 140 - -
Sed06g2223 407 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 82 106 - -
Sed06g2223 407 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 371 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed06g2223 407 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Sed06g2223 407 SMART c2h2final6 6 28 IPR013087 -
Sed06g2223 407 SMART c2h2final6 83 103 IPR013087 -
Sed06g2223 407 SMART c2h2final6 48 78 IPR013087 -
Sed06g2223 407 FunFam Zinc finger protein MAGPIE 2 29 - -
Sed06g2223 407 Gene3D Classic Zinc Finger 62 141 - -
Sed06g2223 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0083 Sed-Chr6:477339 Sed06g2223 Sed-Chr6:45918264 1.30E-142 dispersed
Sed06g2223 Sed-Chr6:45918264 Sed07g1321 Sed-Chr7:10092360 1.30E-82 dispersed
Sed06g2222 Sed-Chr6:45918264 Sed06g2223 Sed-Chr6:45918264 1.20E-239 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38944 PF00096 zf-C2H2 0.0031 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2223 K25870 - csv:101204728 422.55