Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g2223 | ATGGCGACGAATAGATTCCTATGCGAGATTTGCAACAAGGGGTTCAAGAGAGATCAAAATCTTCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAGCCAACAAAGAGGTTGTAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATAATGATCCAGCAAGGGCTCTTGGGGATTTGACAGGAATAAAGAAACACTTTTTCAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCAGACTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAACCATTACCTCAAACCCAATACTTATGGCCAATAATAATAATCATAATCATAATATTCAAATCCCTCCATTAATTCCCACTTCCATTTCTCCAATCTCTCACTTAAACTTCCAAACACAAACCCATTTCAATCCTCTAGATATCAACTCATTTTCCCTCAAAAAAGAACACCAAATTAATTCATCATCCAATTTCATTCCCCCATGGTTGCCTTGTCCTCCAAGATTATCATCATCATCATTAAATAATCTTAATAATGATAATCAAGAGCTTAATCCTCCTCATAATCTCATGATTAATAACCCTAATCATCATCTAATTTCCCAAGCTTCATCTCCTCACATGTCAGCCACAGCACTTCTACAAAAAGCAGCTCAAATGGGAGCAACCATGAGCAGGCCCCACCAGCAGCACTCACGTGATCATCACGTGACTGATTCTTCTTCTGCCAATAGTAATAATATTAATAATAATACAAGTTGTAATTTTGGCATTAACTTGTGTTCCTCACGTGACAGTCAGATTTTTCAAAGTGGTGCTTTTGAAGGGGGGTCTTTTGATCAATTAGATGCATTTGGAGGGACCTTGAAGAAAAATCATGAGATAGTTTTTAATGAGAATACAATGATGTCAAGTGAAGATCAAGGGTTGAGTACAAGAGATTTTTTGGGGCTTAGACCAATTTCTCATAGTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCTTGAATAATGGAGCCTCTGGTCAAAGTCCTCAAAGTCAACTTCAAAAGCAACCCAGCTGGCAAGGTTAG | 1224 | 38.24 | MATNRFLCEICNKGFKRDQNLQLHRRGHNLPWKLKQRANKEVVRKKVYVCPETSCVHNDPARALGDLTGIKKHFFRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTITSNPILMANNNNHNHNIQIPPLIPTSISPISHLNFQTQTHFNPLDINSFSLKKEHQINSSSNFIPPWLPCPPRLSSSSLNNLNNDNQELNPPHNLMINNPNHHLISQASSPHMSATALLQKAAQMGATMSRPHQQHSRDHHVTDSSSANSNNINNNTSCNFGINLCSSRDSQIFQSGAFEGGSFDQLDAFGGTLKKNHEIVFNENTMMSSEDQGLSTRDFLGLRPISHSEFLSNIAAAGYGNCLNNGASGQSPQSQLQKQPSWQG | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 45918264 | 45922164 | - | Sed0025048.2 | Sed06g2223 | 718766 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g2223 | 407 | MobiDBLite | consensus disorder prediction | 269 | 293 | - | - | |
Sed06g2223 | 407 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 109 | 145 | - | - | |
Sed06g2223 | 407 | Gene3D | Classic Zinc Finger | 2 | 29 | - | - | |
Sed06g2223 | 407 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 44 | 78 | - | - | |
Sed06g2223 | 407 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 103 | IPR036236 | - | |
Sed06g2223 | 407 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
Sed06g2223 | 407 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 61 | 140 | - | - | |
Sed06g2223 | 407 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 82 | 106 | - | - | |
Sed06g2223 | 407 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 371 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed06g2223 | 407 | Pfam | Zinc finger, C2H2 type | 6 | 28 | IPR013087 | - | |
Sed06g2223 | 407 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
Sed06g2223 | 407 | SMART | c2h2final6 | 83 | 103 | IPR013087 | - | |
Sed06g2223 | 407 | SMART | c2h2final6 | 48 | 78 | IPR013087 | - | |
Sed06g2223 | 407 | FunFam | Zinc finger protein MAGPIE | 2 | 29 | - | - | |
Sed06g2223 | 407 | Gene3D | Classic Zinc Finger | 62 | 141 | - | - | |
Sed06g2223 | 407 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 28 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0083 | Sed-Chr6:477339 | Sed06g2223 | Sed-Chr6:45918264 | 1.30E-142 | dispersed | |
Sed06g2223 | Sed-Chr6:45918264 | Sed07g1321 | Sed-Chr7:10092360 | 1.30E-82 | dispersed | |
Sed06g2222 | Sed-Chr6:45918264 | Sed06g2223 | Sed-Chr6:45918264 | 1.20E-239 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38944 | PF00096 | zf-C2H2 | 0.0031 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g2223 | K25870 | - | csv:101204728 | 422.55 |