Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2235 ATGATGGAAGATATGTCTACTGCTGTTTCTTTGACCCTTAGTTTGGGTAATCCAAAGTCTGATAGCTCAGGAAGTCCTAGCCATGTCGAATTTACGCGGCTGAAGTTGGTGACGGACACGGTAAATTTGATCTCTGCGTCGGCCCCTGACTTGAGTCCTATTGGCAATGGTAGTTGCCATGATTTTAATAGTAAAGTCAACAGCATAACGGTGTCGAAACCGAATGAGAATGGTCAAGGTAGAGACGGTTTTTGGGGGTTGTTGCCGGAGAATGGCACGAATTTGACTCTAGTTAAGGTAGATGCTTCTTTATCTACTATGGATGATCCAGATGAAATGATAGATGGTGGTTTGTTTGCTCTTGATGGTGGTTCTAATATTAATGTGCAAGAAGTTGTCAAGATTGGAGATGTTAGTAATGGTCATATTGTTGCCAAGGCTATTATATTGGTAGAATCAGGAAAGGTTCCCACTAGTGAACTTCTTGTGGCGACGGTGGGCCCAGATTTAGAAGTATCGGCACCGTTGGAGCTAAGCGCCCCTGCTGTAGTTTTCCAATCGAAAGGGGGGGATGGCGTTCATAAAAGCATTCGAAGTGTCTTTGAACGGGAATGTGTACCCCTTTGGGGTTCGGTATCGATTTGTGGTAGAAGACCGGAAATGGAAGACGCAATTGCTGCCGTTCCTTATTTTTCAAAGATCCCTATCAAAATGTTTGTAGGAAATGGCATGCTTAATGGAATGGGTCAAAGCTTAACCCATCTCAACAGCCATTTTTTCGGTGTTTATGATGGACATGGGGGCTCTCAGGTTGCTGATTATTGTCGAGAGCGCATACACTTGGCATTAGATGAAGAGATAAGAGGATTCAAACAAAATCTAAACAATGTAAGCAATGGAGAAAACTGGCAGCAGGATTGGGAGAGAACCTTTAACAATTGCTTTCTTAGGGTGGACGAGGAAATAGAAGGAAAAGTTGGTAGAACAGTCGGTGGGTGCGATGGAGATGTTTCCGATACCAGCTTTGATCCTGTTGCCCCGGAAACTGTTGGCTCTACCGCTGTTGTGGCCTTGGTCTGTTCATCACACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTCCTATGCCGCGGCAAAGAACCCATGGCACTATCGGTCGATCATAAACCAAATCGGGAAGATGAATATGCTCGAATTGAATCATCTGGAGGCAAGGTCATTCAGTGGAACGGGCATCGCGTGTTTGGCGTTCTTGCAATGTCAAGATCCATTGGTGATAGATATCTGAAGCCGTGGATCATTCCCGATCCGGAAGTCATGTTCATTCCTCGTGCGAAAGAAGACGAATGCCTCATTTTAGCCAGTGATGGCCTGTGGGATGTGATGACGAACGAAGAAGCCTGTGAAGTAGCTCGAAGGAGGATTCTTCTTTGGCACAAAAAACACGGGGCTGCATCTCTTGCTGACCGTGGCACGGGAGTTGATCCAGCTGCACAAGCTGCAGCTGATTACCTTTCACTACTTGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTGATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTGA 1611 45.38 MMEDMSTAVSLTLSLGNPKSDSSGSPSHVEFTRLKLVTDTVNLISASAPDLSPIGNGSCHDFNSKVNSITVSKPNENGQGRDGFWGLLPENGTNLTLVKVDASLSTMDDPDEMIDGGLFALDGGSNINVQEVVKIGDVSNGHIVAKAIILVESGKVPTSELLVATVGPDLEVSAPLELSAPAVVFQSKGGDGVHKSIRSVFERECVPLWGSVSICGRRPEMEDAIAAVPYFSKIPIKMFVGNGMLNGMGQSLTHLNSHFFGVYDGHGGSQVADYCRERIHLALDEEIRGFKQNLNNVSNGENWQQDWERTFNNCFLRVDEEIEGKVGRTVGGCDGDVSDTSFDPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFIPRAKEDECLILASDGLWDVMTNEEACEVARRRILLWHKKHGAASLADRGTGVDPAAQAAADYLSLLALQKGSKDNISVIVVDLKAQRKFKTKS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45984927 45988722 - Sed0013994.1 Sed06g2235 718778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2235 536 PANTHER PROTEIN PHOSPHATASE 187 525 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed06g2235 536 SMART PP2C_4 198 524 IPR001932 -
Sed06g2235 536 MobiDBLite consensus disorder prediction 7 27 - -
Sed06g2235 536 Gene3D - 195 536 IPR036457 -
Sed06g2235 536 Pfam Protein phosphatase 2C 237 519 IPR001932 -
Sed06g2235 536 CDD PP2Cc 210 526 IPR001932 -
Sed06g2235 536 MobiDBLite consensus disorder prediction 1 27 - -
Sed06g2235 536 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169(InterPro)
Sed06g2235 536 SUPERFAMILY PP2C-like 198 527 IPR036457 -
Sed06g2235 536 ProSiteProfiles PPM-type phosphatase domain profile. 208 526 IPR001932 -
Sed06g2235 536 FunFam Protein phosphatase 2C 16 196 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2235 Sed-Chr6:45984927 Sed08g1784 Sed-Chr8:32608837 9.40E-142 dispersed
Sed06g2235 Sed-Chr6:45984927 Sed06g2236 Sed-Chr6:45984927 1.10E-225 tandem
Sed06g0073 Sed-Chr6:431511 Sed06g2235 Sed-Chr6:45984927 2.30E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2235 K14497 - csv:101203499 944.495