Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2260 ATGAGTAATTGGTTAGGTTTTTCTCTCACTCCCCATCTCAAAATCAATGATCCCACCTCCACCTCCGCCGCCGCCGCCGCCGACGACCACCCCAGCCCTGGCAGCTTCCCGCCACTCATGCCGCTCCGCTCCGACGGTTCCCTCTGTATCTCCGCCGCCGCCGCCCACGATTGGAGATCATACGAAAACGAAATAGGTGCATCAAATGAAGATGAAAGTCCAAAACTTGAGGATTTTTTGGGGAATTGCTATTCAAACGATCAGGCTACGAATGATGATAATTTTATTCAGCCTATTAATATTAATCGTAATAATGATGATAATGAAAATAATTACCAAGCTTTAATTTCTAATAATAATGGTAATGCAATTTATAAGTGGTGGGGGCCCATGAATTCTTCTTCCCAAAACGAGTGTGGGTTTCGATCTTTGTCTCTTGGGATGGGCTCCAGCTCCCAAAACGACGTCGTTTCGTTGCCGTCGCCGCCGCATGTGGCGGCGGATTCCCGGAAACGGCCGGTGCCGGCGGGGAAGGTTGTGGTGAAAGAACCTGTTCCTAGAAAGTCTATTGATACTTTTGGACAAAGAACCTCTCAGTTTCGTGGTGTTACTAGGCATAGATGGACAGGTAGATATGAGGCACATTTATGGGACAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGGAGGCAAGTTTATCTTGGTGGCTATGATAAGGAAGAAAAAGCAGCACGAGCATATGATTTGGCTGCATTAAAATATTGGGGTCCAACAACCCATATAAACTTTCCCCTAAGTGCTTATGAAAATGAGCTCGAGCAGATGAAAAACATGACTAGGCAGGAGTTCGTAGCCAACTTGAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGGGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCAAGAATTGGAAGGGTCGCAGGAAATAAAGATTTGTACTTGGGCACATTTAGCACACAAGAGGAGGCAGCGGAGGCCTACGACGTAGCGGCCATCAAGTTTCGGGGGACGAGTGCTGTGACGAATTTCGACATTAGTAGGTATGACGTGAAGAGGATTTGCTCTAGCTCGACTCTAATTGCTAGCGACCTTGCGAAACGCTCGCCATTGAAGGACGATACTCCCTCGACAACCAAGGAATATACTACTTGTGCTCCACTGTCATCCTCACAGCCTCTCTTAGCCATCACTGATGGTGATTCCGAGAGTAACCCCGAGTTGACCGACATGGTTTGGTGTGACCATGCTATTGTAGAAGATGATAACCATCATCACGAGAATGCAGCGAAAATGAACAATGACTTGAGTTTGATGGGTTCGAGCCATAGAACTGACCCATCAAAGTGTTGTACAATGCAGAACAATGGGGAGTTCGGGATCGGGGTCGGGGGAGGCGAGTATTCGCAAGGCTATTACGCAATGCAAGATGCAAAATATGAAGATGGGAATGATGAAGGGGATCAAAATAGGCAGCTGGGAAATAATGTAACATTGGGTCTTCATCATGTTCCAATGTTTGCTTTATGGAATGAAGGAGCTTAA 1587 46.5 MSNWLGFSLTPHLKINDPTSTSAAAAADDHPSPGSFPPLMPLRSDGSLCISAAAAHDWRSYENEIGASNEDESPKLEDFLGNCYSNDQATNDDNFIQPININRNNDDNENNYQALISNNNGNAIYKWWGPMNSSSQNECGFRSLSLGMGSSSQNDVVSLPSPPHVAADSRKRPVPAGKVVVKEPVPRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSAYENELEQMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDDTPSTTKEYTTCAPLSSSQPLLAITDGDSESNPELTDMVWCDHAIVEDDNHHHENAAKMNNDLSLMGSSHRTDPSKCCTMQNNGEFGIGVGGGEYSQGYYAMQDAKYEDGNDEGDQNRQLGNNVTLGLHHVPMFALWNEGA 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46176610 46182208 + Sed0023201.1 Sed06g2260 718803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2260 528 ProSiteProfiles AP2/ERF domain profile. 301 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 SUPERFAMILY DNA-binding domain 300 361 IPR016177 GO:0003677(InterPro)
Sed06g2260 528 FunFam AP2-like ethylene-responsive transcription factor 300 361 - -
Sed06g2260 528 SUPERFAMILY DNA-binding domain 198 267 IPR016177 GO:0003677(InterPro)
Sed06g2260 528 FunFam AP2-like ethylene-responsive transcription factor ANT 198 267 - -
Sed06g2260 528 PRINTS Ethylene responsive element binding protein signature 341 361 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 CDD AP2 198 267 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 Gene3D AP2/ERF domain 301 361 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 Gene3D AP2/ERF domain 198 267 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 123 393 - -
Sed06g2260 528 ProSiteProfiles AP2/ERF domain profile. 199 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 SMART rav1_2 199 271 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 SMART rav1_2 301 365 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 MobiDBLite consensus disorder prediction 153 173 - -
Sed06g2260 528 Pfam AP2 domain 199 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 Pfam AP2 domain 302 351 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed06g2260 528 CDD AP2 300 361 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2260 Sed-Chr6:46176610 Sed10g1151 Sed-Chr10:16090429 3.30E-107 dispersed
Sed06g2260 Sed-Chr6:46176610 Sed10g0753 Sed-Chr10:5206626 1.30E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38948 PF00847 AP2 7.30E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2260 K09285 - csv:101205762 764.992