Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2262 ATGAATTCAAGTCCAAAGATCTGCACCTCTCCTTTCACAGCAACTCAATGGCAAGAACTGGAACATCAAGCTCTGATCTTCAAATACATGGTTTCAGGAGTACCAATACCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTAGAATCTTCCATTTCTGCAAGGCTCTTCCCTCACAAACCAATTGGATGGGGATGTTTTGAGATGGGTTTTGGCAGAAAAGCAGACCCTGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTTTGAGAAGCACATGCATAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAAAGCCAACAACTCAAACCCCACCTCCTTCAATCCTCACTTCAACCAGGAATGTCTCTTCTTCCACTCCAACTTCATCTTCGTATTCCCTCTCTAATCTTTCTTCTTCTTCTTCACTGACCTGTGAAACTCAACCTTATCATCAAGCCCCTTCTGCTGCTGCTGCTGCTGCTGCTGCTTCTTATCATGAATCTTCCATTCATGCATATCTATATCCTCAATATTCCTCCTCCAGACCTCCATGTTCAGATTTCTCTCCCAACAATACAAACCCTCAACTCTTTTTGTACTCAGGGACTCATTCTCAGGCTGACAAGGAATACAGGGATATTAATGGTCCAAGAGAAGATGTGGGGGTTCAGGCACTCTTCCCCTCATTTACAGATTCTGCAAGAAGCTTAGGTGAGGTTTATAGTCGGCCAATAGGAATGGATTCTTATAAAGGATACTCCCAATCTGTTTCCCAAAGCCAGCAAATTTACAGTTCTAAACAGTCAAGGATACAAGAGCAACACTGCTTTGTATTGGGCACAGATATCAATAAATCATCGAGATCGCCTAAAACAGAGGAGGAAGAAGAAGATGCAGAAACACAGAAGCCACTGCTCCACTTTTTTGAAGATTGTCCAACAAAAAACTCAGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATCCATAGTGGAAATTTTATTGGGTTATGA 1068 42.23 MNSSPKICTSPFTATQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLESSISARLFPHKPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYFEKHMHRGRNRSRKPVEISSKPTTQTPPPSILTSTRNVSSSTPTSSSYSLSNLSSSSSLTCETQPYHQAPSAAAAAAAASYHESSIHAYLYPQYSSSRPPCSDFSPNNTNPQLFLYSGTHSQADKEYRDINGPREDVGVQALFPSFTDSARSLGEVYSRPIGMDSYKGYSQSVSQSQQIYSSKQSRIQEQHCFVLGTDINKSSRSPKTEEEEEDAETQKPLLHFFEDCPTKNSDSWLDLASNSSIHSGNFIGL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46200318 46202763 - Sed0010247.1 Sed06g2262 718805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2262 355 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Sed06g2262 355 SMART QLQ_2 10 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g2262 355 MobiDBLite consensus disorder prediction 305 321 - -
Sed06g2262 355 Pfam WRC 77 119 IPR014977 -
Sed06g2262 355 MobiDBLite consensus disorder prediction 103 154 - -
Sed06g2262 355 MobiDBLite consensus disorder prediction 119 154 - -
Sed06g2262 355 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g2262 355 Pfam QLQ 11 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g2262 355 PANTHER GROWTH-REGULATING FACTOR 5 8 340 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed06g2262 355 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2262 Sed-Chr6:46200318 Sed08g0909 Sed-Chr8:7619195 5.30E-56 dispersed
Sed06g0051 Sed-Chr6:308788 Sed06g2262 Sed-Chr6:46200318 7.10E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38949 PF08879 WRC 2.60E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2262 - - - 0.0