Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2262 ATGAATTCAAGTCCAAAGATCTGCACCTCTCCTTTCACAGCAACTCAATGGCAAGAACTGGAACATCAAGCTCTGATCTTCAAATACATGGTTTCAGGAGTACCAATACCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTAGAATCTTCCATTTCTGCAAGGCTCTTCCCTCACAAACCAATTGGATGGGGATGTTTTGAGATGGGTTTTGGCAGAAAAGCAGACCCTGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTTTGAGAAGCACATGCATAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAAAGCCAACAACTCAAACCCCACCTCCTTCAATCCTCACTTCAACCAGGAATGTCTCTTCTTCCACTCCAACTTCATCTTCGTATTCCCTCTCTAATCTTTCTTCTTCTTCTTCACTGACCTGTGAAACTCAACCTTATCATCAAGCCCCTTCTGCTGCTGCTGCTGCTGCTGCTGCTTCTTATCATGAATCTTCCATTCATGCATATCTATATCCTCAATATTCCTCCTCCAGACCTCCATGTTCAGATTTCTCTCCCAACAATACAAACCCTCAACTCTTTTTGTACTCAGGGACTCATTCTCAGGCTGACAAGGAATACAGGGATATTAATGGTCCAAGAGAAGATGTGGGGGTTCAGGCACTCTTCCCCTCATTTACAGATTCTGCAAGAAGCTTAGGTGAGGTTTATAGTCGGCCAATAGGAATGGATTCTTATAAAGGATACTCCCAATCTGTTTCCCAAAGCCAGCAAATTTACAGTTCTAAACAGTCAAGGATACAAGAGCAACACTGCTTTGTATTGGGCACAGATATCAATAAATCATCGAGATCGCCTAAAACAGAGGAGGAAGAAGAAGATGCAGAAACACAGAAGCCACTGCTCCACTTTTTTGAAGATTGTCCAACAAAAAACTCAGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATCCATAGTGGAAATTTTATTGGGTTATGA 1068 42.23 MNSSPKICTSPFTATQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLESSISARLFPHKPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYFEKHMHRGRNRSRKPVEISSKPTTQTPPPSILTSTRNVSSSTPTSSSYSLSNLSSSSSLTCETQPYHQAPSAAAAAAAASYHESSIHAYLYPQYSSSRPPCSDFSPNNTNPQLFLYSGTHSQADKEYRDINGPREDVGVQALFPSFTDSARSLGEVYSRPIGMDSYKGYSQSVSQSQQIYSSKQSRIQEQHCFVLGTDINKSSRSPKTEEEEEDAETQKPLLHFFEDCPTKNSDSWLDLASNSSIHSGNFIGL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46200318 46202763 - Sed0010247.1 Sed06g2262 718805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2262 355 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Sed06g2262 355 SMART QLQ_2 10 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g2262 355 MobiDBLite consensus disorder prediction 305 321 - -
Sed06g2262 355 Pfam WRC 77 119 IPR014977 -
Sed06g2262 355 MobiDBLite consensus disorder prediction 103 154 - -
Sed06g2262 355 MobiDBLite consensus disorder prediction 119 154 - -
Sed06g2262 355 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g2262 355 Pfam QLQ 11 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g2262 355 PANTHER GROWTH-REGULATING FACTOR 5 8 340 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed06g2262 355 MobiDBLite consensus disorder prediction 300 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2262 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2262 Sed-Chr6:46200318 Sed08g0909 Sed-Chr8:7619195 5.30E-56 dispersed
Sed06g0051 Sed-Chr6:308788 Sed06g2262 Sed-Chr6:46200318 7.10E-148 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0553 . 46 368 GRF Transcription Factor Family AT3G52910 52.7 2.1e-58 224.2
Sed06g0051 . 11 110 GRF Transcription Factor Family AT3G13960 80.0 7.0e-49 192.6
Sed06g2262 . 2 110 GRF Transcription Factor Family AT3G13960 74.3 4.5e-48 189.9
Sed03g1822 . 2 111 GRF Transcription Factor Family AT3G13960 69.6 4.8e-42 169.9
Sed08g0909 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 1.8e-41 167.9
Sed12g1716 . 3 105 GRF Transcription Factor Family AT3G13960 69.9 6.5e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007893 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38949 PF08879 WRC 2.60E-19 No_clan Sed TF