Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2271 ATGCAGCTTTTTTTCCGCCATTTCTTGTTACTGGTAAGCTTTTCTTTCCCTTTCAATGGCGTTTCTGGTTTAACCCCCGATGGGTTTGCTTTATTATCACTCAAAAGCCACTGGAATGTTGAGGTTCCGTTTGTCCCTGTTTGGAATGCCTCTGACCCCACTCCCTGTTCTTGGGCTGGGATTCAATGTGATCAAAATCTTCGTGTCATCACATTGAATCTCTCTCATTATGGCGTCTCGGGTCCGATTGGACCCGAGATTGCCCGTTTGACCCAGTTGCACACCGTTGATTTGTTCACGAACAGTTTTTCTGGTGCAATTCCTTATGGGATTGGCAACTGTACCCATTTAGAGTTCTTGGATCTGGGCGTTAACCAATTTGAGGGGGAAATTCCTCAGTCCTTAACAAACCTTAGGAATTTGACATATTTGAACTTCCATGCTAATAATCTAACTGGTGCAATACCCATCTCGTTATTTCAAAATCTGGATTTGCAATATGTTTATCTTAGTGAAAATAAACTCAACGGTTCTATTCCTTCAAATGTGGGGAATTTGAGGCAGTTGTTGGATTTTTATCTGTATGGAAATAATCAGTTGTCTGGTACTATACCTTCTTCCATAGGGAATTGTACTCAATTGATGAATCTTTATTTGAACCAGAATAAGTTGGTGGGAGTGTTGCCCAATAGTCTTAACAATCTTCATAATCTTGTTAATTTGGGTGTGAGCCATAACAATCTTGAGGGTCCAATTCCTTTAGGTTCAGGGGATTGCCAGAGTTTAGAATATCTAGATTTGTCATTCAATGGTTATTCAGGAGGTATACCTGTGGAGCTGGGCAATTGTAGCAGCCTAAGAACCTTACTGATTGTGAATTCCAGCCTTACGGGTCGTATTCCTTCCTCCTTCGGTCAGTTAAGTAACCTTATGACTCTTGATCTCTCTAAAAATCAATTGTCTGGGAATATACCAATCGAATTTGGGGATTGCAGATCGTTGAAGGAACTGAATTTGTATGTAAATCTACTCGAGGGACGGATCCCTAGTGAATTGGGTTTCCTAAGTGGATTAGAGACTCTTCAGTTGTTTTCGAATCGGTTGACTGGTGAGATTCCAATTAGCATCTGGAAGATTGCAAGTCTCCAGCATATTATTGTGTACGACAACAACCTTTCTGGCGAACTTCCCTCGATAATAACTGAGCTCAAGAACCTCAAAAACATTTCTGTGTTCAACAACAAGTTTTCTGGAATCATACCTCAAAGTCTTGGACTCAACAGAAGCTTAGTGCAAGTGGAGTTCACTAATAATCAATTCTCTGGTCAAATTCCACCTAATCTATGCTATGGGAAGACATTAAGGTTGTTAAATTTAGGTTCGAATCAATTTCAAGGCAGCGTACCTTCCGATATCGGAACCTGTGGGGCTCTTCAGAGGTTGATTTTGAGCAAGAATAATCTAACAGGGGCTCTGCCAGAATTTACCAGAAATCATGGCCTTCGGTTTTTGGATGCGAGTGAAAACAACCTGAATGGAACAATTCCCTCAAGTTTAGGTAACTGCTATAATCTCAGCACGATTAATTTGTCAAGCAACAAGCTTACAGGACATATACCTGATGAGTTGGGAAATCTTGTGAACCTCCAAAGTTTGAGTTTGTCTCACAACTTCTTGGAAGGACCTTTGCCATCTTCCCTGTCAAATTGTACCAGACTGGATGAGTTTGACGTAGGATTCAATTTATTGAATGGTTCAGTACCTCGTAGTTTTTCCGGCTTGAGAGTTATATCCACGTTGATACTGAAAGAGAATCGATTTACGGGAGGCATCCCGAATGTATTATCAGAACTTGAAAGCCTTTCACTGCTAGATCTTGGTGGAAATTTGTTTGGAGGTGAAATCCCTTCATCTATTGCAGCTTTGAAGAATCTGTTTTATTCCTTGAATCTCAGTAACAATGGGTTAACTAGCCAACTACCTTCTGAGCTGGCAAGTTTGGTCAAGTTAGGGAAGTTAGATATCTCTCACAATAATTTGACTGGAACTTTAAGCGTTCTTGGCGAACTAAGTTCATCGTTACTTGAGCTTAACATTTCTGATAACTTATTTACGGGTCCTGTGCCACCAACTTTAATGAAGTTACTTAATTCTGATCCCTCATCGTTTTCTGGTAATGCTGGGTTGTGCATCAGCTGTGAAGATCTAGATGGCTTAAGTTGCAACAGAAATAGCAGTATCAAACCTTGTGCCAGTGATGCAAGCTCTCGTCTTAGCGATGCACAAATTGCAATAATAGCTCTGGGAATTTCACTCTTTATTGTTCTTTTGCTTCTTGGATTGGTTTATAAGTTTGTTTACAAAAGAAGAAACAAACAAAACATTGAGACCTCTGCTCCAGTAGGATCAACTTCCTTGCTCCACAAGGTAATGGAGGCCACTGATAATCTAGATGAGCGTTTCATCATCGGGAGAGGAGCACATGGAGTTGTTTACAAGGCTTCCCTAGATTCAAATAGAATTTTTGCAATAAAGAAGCTTACTTTTGTAGGATCTAAAGAGGGAAGGCAGAGTATGGTTAAAGAAATTCGAACTGTCGGCGACATTAGGCACCGGAACTTGATCACTCTGGAAGACTTTTGGTTGGGAAAAGACTATGGTCTATTGCTGTACAGATACCAAGTTAATGGGAGCCTTTATGATGTGTTGCATGGGATGAATCCATCTCCGGCTCTAACATGGAAAGTCCGCTATAATATAGCCACCGGTGTTGCTCATGGATTGGCGTATATCCACTACGATTGTGATCCTCCTATAATACACCGTGACATCAAACCGCATAATATTCTTCTAGATTCAGAGATGGAACCTCGTATTGGCGATTTTGGTCTTGCAAAGCTGTTGGATCAGAACTCTGTATCAGCAACTTCATCTTCTTTTGCGGGTACAATTGGCTACATTGCCCCAGAGAATGCATTTTCAGTAGCAAGGAGCCAAGCTTCAGATGTGTACAGTTATGGGGTGGTTTTACTTGAGCTGATAACGGGAAAGAAGCCATCAGATCCGTCGTTTATGGAGGACGGGAATATCATGGCTTGGGTTCGGTCGGTTTGGAATGAGGTGGGAGAAATCGATAGGGTTATTGATCCAAGGCTTGTGGAAGAACTTATAAATTCTGATCATAAGGAGCAGATTAAGCAGGTGCTTCTAATGGCTTTGAGATGCACAGAAAAGGAGCCTACCAAGAGACCTACAATGAGAGATGTTGTAAACTACTTGATTGATTCAAAGACAAGTCATTAA 3303 40.96 MQLFFRHFLLLVSFSFPFNGVSGLTPDGFALLSLKSHWNVEVPFVPVWNASDPTPCSWAGIQCDQNLRVITLNLSHYGVSGPIGPEIARLTQLHTVDLFTNSFSGAIPYGIGNCTHLEFLDLGVNQFEGEIPQSLTNLRNLTYLNFHANNLTGAIPISLFQNLDLQYVYLSENKLNGSIPSNVGNLRQLLDFYLYGNNQLSGTIPSSIGNCTQLMNLYLNQNKLVGVLPNSLNNLHNLVNLGVSHNNLEGPIPLGSGDCQSLEYLDLSFNGYSGGIPVELGNCSSLRTLLIVNSSLTGRIPSSFGQLSNLMTLDLSKNQLSGNIPIEFGDCRSLKELNLYVNLLEGRIPSELGFLSGLETLQLFSNRLTGEIPISIWKIASLQHIIVYDNNLSGELPSIITELKNLKNISVFNNKFSGIIPQSLGLNRSLVQVEFTNNQFSGQIPPNLCYGKTLRLLNLGSNQFQGSVPSDIGTCGALQRLILSKNNLTGALPEFTRNHGLRFLDASENNLNGTIPSSLGNCYNLSTINLSSNKLTGHIPDELGNLVNLQSLSLSHNFLEGPLPSSLSNCTRLDEFDVGFNLLNGSVPRSFSGLRVISTLILKENRFTGGIPNVLSELESLSLLDLGGNLFGGEIPSSIAALKNLFYSLNLSNNGLTSQLPSELASLVKLGKLDISHNNLTGTLSVLGELSSSLLELNISDNLFTGPVPPTLMKLLNSDPSSFSGNAGLCISCEDLDGLSCNRNSSIKPCASDASSRLSDAQIAIIALGISLFIVLLLLGLVYKFVYKRRNKQNIETSAPVGSTSLLHKVMEATDNLDERFIIGRGAHGVVYKASLDSNRIFAIKKLTFVGSKEGRQSMVKEIRTVGDIRHRNLITLEDFWLGKDYGLLLYRYQVNGSLYDVLHGMNPSPALTWKVRYNIATGVAHGLAYIHYDCDPPIIHRDIKPHNILLDSEMEPRIGDFGLAKLLDQNSVSATSSSFAGTIGYIAPENAFSVARSQASDVYSYGVVLLELITGKKPSDPSFMEDGNIMAWVRSVWNEVGEIDRVIDPRLVEELINSDHKEQIKQVLLMALRCTEKEPTKRPTMRDVVNYLIDSKTSH 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46255991 46259704 - Sed0005839.1 Sed06g2271 718814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2271 1100 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 276 - -
Sed06g2271 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 939 951 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2271 1100 SMART serkin_6 817 1093 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2271 1100 SMART LRR_typ_2 355 379 IPR003591 -
Sed06g2271 1100 SMART LRR_typ_2 138 162 IPR003591 -
Sed06g2271 1100 SMART LRR_typ_2 618 642 IPR003591 -
Sed06g2271 1100 SMART LRR_typ_2 235 259 IPR003591 -
Sed06g2271 1100 SMART LRR_typ_2 667 690 IPR003591 -
Sed06g2271 1100 SMART LRR_typ_2 307 331 IPR003591 -
Sed06g2271 1100 SMART LRR_typ_2 546 570 IPR003591 -
Sed06g2271 1100 Pfam Protein kinase domain 822 1091 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2271 1100 FunFam Leucine-rich repeat receptor-like protein kinase 25 180 - -
Sed06g2271 1100 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Sed06g2271 1100 Pfam Leucine Rich Repeat 648 667 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 Pfam Leucine Rich Repeat 524 546 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 Pfam Leucine Rich Repeat 548 570 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 Pfam Leucine Rich Repeat 693 715 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 Pfam Leucine Rich Repeat 261 283 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 Pfam Leucine Rich Repeat 454 475 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 452 738 - -
Sed06g2271 1100 ProSitePatterns Protein kinases ATP-binding region signature. 823 846 IPR017441 GO:0005524(InterPro)
Sed06g2271 1100 FunFam Serine/threonine-protein kinase-like protein CCR4 894 1100 - -
Sed06g2271 1100 Gene3D Ribonuclease Inhibitor 355 427 IPR032675 -
Sed06g2271 1100 Pfam Leucine rich repeat 285 344 IPR001611 GO:0005515(InterPro)
Sed06g2271 1100 SUPERFAMILY RNI-like 72 423 - -
Sed06g2271 1100 Gene3D Phosphorylase Kinase; domain 1 782 893 - -
Sed06g2271 1100 Gene3D Ribonuclease Inhibitor 190 352 IPR032675 -
Sed06g2271 1100 Gene3D Ribonuclease Inhibitor 428 737 IPR032675 -
Sed06g2271 1100 SUPERFAMILY RNI-like 348 702 - -
Sed06g2271 1100 Gene3D Transferase(Phosphotransferase) domain 1 895 1100 - -
Sed06g2271 1100 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 600 1090 IPR052592 -
Sed06g2271 1100 ProSiteProfiles Protein kinase domain profile. 817 1100 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2271 1100 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 783 893 - -
Sed06g2271 1100 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Sed06g2271 1100 SUPERFAMILY Protein kinase-like (PK-like) 797 1093 IPR011009 -
Sed06g2271 1100 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 302 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0046 Sed-Chr6:263052 Sed06g2271 Sed-Chr6:46255991 4.90E-36 dispersed
Sed06g2271 Sed-Chr6:46255991 Sed12g0417 Sed-Chr12:2518339 3.10E-62 dispersed
Sed06g2270 Sed-Chr6:46248779 Sed06g2271 Sed-Chr6:46255991 2.00E-37 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79409 PF00069 Pkinase 4.20E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2271 K28089 - csv:101204561 1621.68