Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2275 ATGAGACCTCTTCAGCCGCCGCAGGGTGTCAATCCGGCCTCCGATCGTCCTCGTCGCCGGCCGAATCTAACCCTTCCTCTTCCCCAGAGAGACAATACGTCGTTGGCCGTTCCTCTCCCTTTGCCCCCGCCGGCGTCTTCCAACTCCTCCATGCCTCCTCCGCCCTCCACCAGCCGTCCGACGGAGCCTCCGCCTCGGAAGCATCAGGTCTTCAGCCTCTCCGATTTCGACAGAGTCAGTCGAATCGGAAGCGGATGCGGCGGCACCGTCTACAAAGTGATTCACCGCCCCACCGGCCGCGTTTATGCTCTGAAAGTCATTTACGGCAACCACGAAGACGCGGTTAGGTTACAGATGTGCCGCGAGGTCGAGATCCTTCGCGATGTTGATAATCCCTTTGTGGTGAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTTGAATACATGGATCGTGGATCTCTTGAAGGAACTCACATCCCTAACGAATCTCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTCGCTTATCTCCATAGCCGCCGCATCGTTCATCGCGATATCAAACCTTCGAATCTCTTGATTAATTCACGGCGGCAGGTTAAGATCGCCGATTTTGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCATCAGTTGGGACGATTGCGTATATGAGCCCTGAGAGGATCAATTCGGATCTGAATCAGGGCCAGTACAATGGCTACGCTGGGGATATTTGGAGCTTTGGAGTTAGCATATTGGAATTTTATCTTGGACGGTTTCCTCTTGCTGTGGAGAGGCCTGGGGATTGGGCGAGTTTGATGTGTGCTATCTGTATGGCTCAACCACCCGAGGCGCCCCAGTCGGCATCGCTGGAGTTTTGCCATTTCATTGCTTGTTGTTTGCAGAGAGAAGCGAGGAAGAGATGGACTGCAGCTGCATTGCTCGAACATGCGTTCATAACTAGGAAAAATGGTGCTGCGGCGGTGAGTCAGTACCAGAATCAGCAGACAAATCATCAGAATCTTCGTCAATTGTTACCGCCGCCGCCGCTTCGCCCTTGA 1095 53.61 MRPLQPPQGVNPASDRPRRRPNLTLPLPQRDNTSLAVPLPLPPPASSNSSMPPPPSTSRPTEPPPRKHQVFSLSDFDRVSRIGSGCGGTVYKVIHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPFVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPNESHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPQSASLEFCHFIACCLQREARKRWTAAALLEHAFITRKNGAAAVSQYQNQQTNHQNLRQLLPPPPLRP 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46280110 46281204 + Sed0005912.1 Sed06g2275 718818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2275 364 MobiDBLite consensus disorder prediction 37 62 - -
Sed06g2275 364 ProSiteProfiles Protein kinase domain profile. 76 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2275 364 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 65 342 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed06g2275 364 Gene3D Transferase(Phosphotransferase) domain 1 158 356 - -
Sed06g2275 364 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524(InterPro)
Sed06g2275 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g2275 364 MobiDBLite consensus disorder prediction 1 68 - -
Sed06g2275 364 SUPERFAMILY Protein kinase-like (PK-like) 48 343 IPR011009 -
Sed06g2275 364 Gene3D Phosphorylase Kinase; domain 1 59 155 - -
Sed06g2275 364 Pfam Protein kinase domain 78 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2275 364 SMART serkin_6 76 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g2275 364 CDD PKc_MAPKK_plant_like 74 332 - -
Sed06g2275 364 FunFam Mitogen-activated protein kinase 2 156 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1782 Sed-Chr1:13052435 Sed06g2275 Sed-Chr6:46280110 2.00E-83 dispersed
Sed06g2275 Sed-Chr6:46280110 Sed08g2774 Sed-Chr8:39332288 5.30E-80 dispersed
Sed06g0045 Sed-Chr6:259746 Sed06g2275 Sed-Chr6:46280110 1.80E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79410 PF00069 Pkinase 2.90E-59 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2275 K13413 - csv:101219669 576.244