Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g2276 ATGATGGGATCAATTGAGGAGAGAACAAATTACCTATCAGATGATGATATTCCATTGAAGGGAACACCGGTTTCGAAAAACGTATCGCATAGCTTTGATTTTGAGGCGGATCATGTGCGTTCTTCTCCAGATGATAAAAGATGGTGGAAGAGGAACAACATTCGGATTAGACCTCTTGAAAGTGCTAAAATAGTGTTGATTAATGCTAAGATCAACGTGTTGCTGCCTTTTGGTCCTTTGGCAATCCTGCTACATTATTTAACTGGAAAGCATGGATGGGTCTTCTTTTTCACTTTACTTGGAATTACACCTTTGGCAGAGCGTCTTGGTTATGCCACTGAGCAGCTTGCTTCCTTTACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATATCGATTTATGCATTAAAGAGTGGGATGATTAGAGTTGTTCAACAGTCATTACTGGGGTCAATCTTGTCGAACATGCTCCTAGTGCTTGGGTGTGCTTTCTTCACCGGTGGGATTGTTCATCATAAGAAGGTGCAGACTTTCAATAAGGGTACTGCTGTGGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACGTTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCTCTTTCAAGATTTAGCAGTTGTATTATGTTAATTGCATATGCCAGCTACCTTTACTTTCAACTAAAAAGTCAGCACAATCTCTATGGTCCTCTTGATGAGGGAGGCGATGATGAAGTTGAGGAGGATCCTGAGCTTTATGCTTGGGAATCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCGATTTTATCAGGATACCTCGTGGATGCTATCGAGGGAGCATCTGATTCATTACATCTGCCAGTGGCTTTTATCAGTGTAATTTTGTTGCCAATTGTGGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCGTTTTGCGTTGTCGTTGGATGGTGTATGGGAAGTCCAATGGACTTGAACTTTAAACTCTTTGAGACAGCAACTCTGTTTATAACTGTGCTAGTGGTGGCTTTTATGTTACAGGAGGGGACATCAAATTATTTCAAAGGTCTAATGCTAATTCTATGCTACCTCATTGTCGCAGCCAGCTTTTTTGTACATATCGACCCTAGCAATGATGATGATTAA 1293 41.3 MMGSIEERTNYLSDDDIPLKGTPVSKNVSHSFDFEADHVRSSPDDKRWWKRNNIRIRPLESAKIVLINAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLASFTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQTFNKGTAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASYLYFQLKSQHNLYGPLDEGGDDEVEEDPELYAWESIGWLAILTVWVSILSGYLVDAIEGASDSLHLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGSPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHIDPSNDDD 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46282696 46287670 + Sed0003782.1 Sed06g2276 718819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g2276 430 FunFam Vacuolar cation/proton exchanger 265 421 - -
Sed06g2276 430 Pfam Sodium/calcium exchanger protein 277 419 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2276 430 Pfam Sodium/calcium exchanger protein 93 248 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g2276 430 Gene3D - 268 421 IPR044880 -
Sed06g2276 430 Gene3D - 122 266 IPR044880 -
Sed06g2276 430 FunFam Vacuolar cation/proton exchanger 122 261 - -
Sed06g2276 430 NCBIfam calcium/proton exchanger 74 420 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Sed06g2276 430 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 33 425 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2276 Sed-Chr6:46282696 Sed08g2887 Sed-Chr8:39978048 8.60E-154 dispersed
Sed01g1162 Sed-Chr1:8643612 Sed06g2276 Sed-Chr6:46282696 2.90E-70 transposed
Sed02g0224 Sed-Chr2:35491310 Sed06g2276 Sed-Chr6:46282696 1.90E-92 transposed
Sed06g0044 Sed-Chr6:253475 Sed06g2276 Sed-Chr6:46282696 3.00E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g2276 K07300 - csv:101219432 754.592